Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.31□□□□□ -2.04
SDC1P18827 MIR3913-1-201ENST00000577744 102 ntBASIC2.31□□□□□ -2.04
SDC1P18827 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
SDC1P18827 NRBF2P1-201ENST00000587407 859 ntBASIC2.31□□□□□ -2.04
SDC1P18827 AC040904.1-201ENST00000590850 223 ntBASIC2.31□□□□□ -2.04
SDC1P18827 AC067747.1-201ENST00000608026 250 ntBASIC2.31□□□□□ -2.04
SDC1P18827 AC012409.4-201ENST00000612923 249 ntBASIC2.31□□□□□ -2.04
SDC1P18827 AC011939.3-201ENST00000613686 466 ntBASIC2.31□□□□□ -2.04
SDC1P18827 SCARNA17.4-201ENST00000614296 143 ntBASIC2.31□□□□□ -2.04
SDC1P18827 FO624990.1-201ENST00000636373 85 ntBASIC2.31□□□□□ -2.04
SDC1P18827 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.31□□□□□ -2.04
SDC1P18827 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
SDC1P18827 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
SDC1P18827 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
SDC1P18827 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.3□□□□□ -2.04
SDC1P18827 AC010889.1-201ENST00000566193 2666 ntBASIC2.3□□□□□ -2.04
SDC1P18827 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.3□□□□□ -2.04
SDC1P18827 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
SDC1P18827 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
SDC1P18827 RNU6-7-201ENST00000364784 107 ntBASIC2.3□□□□□ -2.04
SDC1P18827 RNU1-51P-201ENST00000365345 176 ntBASIC2.3□□□□□ -2.04
SDC1P18827 RNU6-8-201ENST00000365467 107 ntBASIC2.3□□□□□ -2.04
SDC1P18827 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
SDC1P18827 Z98749.2-208ENST00000381646 500 ntBASIC2.3□□□□□ -2.04
SDC1P18827 SNORA75B-201ENST00000384053 137 ntBASIC2.3□□□□□ -2.04
SDC1P18827 RNU6-348P-201ENST00000384386 107 ntBASIC2.3□□□□□ -2.04
SDC1P18827 MIR627-201ENST00000384979 97 ntBASIC2.3□□□□□ -2.04
SDC1P18827 MIR301A-201ENST00000385261 86 ntBASIC2.3□□□□□ -2.04
SDC1P18827 AL513475.1-201ENST00000406602 315 ntBASIC2.3□□□□□ -2.04
SDC1P18827 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.3□□□□□ -2.04
SDC1P18827 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC2.3□□□□□ -2.04
SDC1P18827 OR51A5P-201ENST00000415429 942 ntBASIC2.3□□□□□ -2.04
SDC1P18827 BX295541.1-201ENST00000417774 250 ntBASIC2.3□□□□□ -2.04
SDC1P18827 C1DP2-201ENST00000418167 426 ntBASIC2.3□□□□□ -2.04
SDC1P18827 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.3□□□□□ -2.04
SDC1P18827 MTATP6P16-201ENST00000434543 526 ntBASIC2.3□□□□□ -2.04
SDC1P18827 BRK1P2-201ENST00000442875 223 ntBASIC2.3□□□□□ -2.04
SDC1P18827 AC104389.3-201ENST00000445629 235 ntBASIC2.3□□□□□ -2.04
SDC1P18827 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC2.3□□□□□ -2.04
SDC1P18827 AC117522.1-201ENST00000509821 380 ntBASIC2.3□□□□□ -2.04
SDC1P18827 MTCO3P28-201ENST00000513351 515 ntBASIC2.3□□□□□ -2.04
SDC1P18827 AC117532.1-201ENST00000514638 323 ntBASIC2.3□□□□□ -2.04
SDC1P18827 RNA5SP356-201ENST00000515972 94 ntBASIC2.3□□□□□ -2.04
SDC1P18827 RNU6-123P-201ENST00000516163 102 ntBASIC2.3□□□□□ -2.04
SDC1P18827 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.3□□□□□ -2.04
SDC1P18827 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.3□□□□□ -2.04
SDC1P18827 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.3□□□□□ -2.04
SDC1P18827 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.3□□□□□ -2.04
SDC1P18827 AC006199.1-201ENST00000548728 219 ntBASIC2.3□□□□□ -2.04
SDC1P18827 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.3□□□□□ -2.04
SDC1P18827 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.3□□□□□ -2.04
SDC1P18827 AC010620.1-201ENST00000601088 1102 ntBASIC2.3□□□□□ -2.04
SDC1P18827 AC087752.4-201ENST00000605911 462 ntBASIC2.3□□□□□ -2.04
SDC1P18827 MIR98-201ENST00000606724 119 ntBASIC2.3□□□□□ -2.04
SDC1P18827 AC098614.4-201ENST00000607601 462 ntBASIC2.3□□□□□ -2.04
SDC1P18827 AL161734.1-201ENST00000609720 557 ntBASIC2.3□□□□□ -2.04
SDC1P18827 MIR7106-201ENST00000612419 65 ntBASIC2.3□□□□□ -2.04
SDC1P18827 AL589743.7-201ENST00000612637 233 ntBASIC2.3□□□□□ -2.04
SDC1P18827 U4.3-201ENST00000621047 82 ntBASIC2.3□□□□□ -2.04
SDC1P18827 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.3□□□□□ -2.04
SDC1P18827 MIR3199-2-201ENST00000636243 86 ntBASIC2.3□□□□□ -2.04
SDC1P18827 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
SDC1P18827 AC103710.2-202ENST00000641454 2853 ntBASIC2.3□□□□□ -2.04
SDC1P18827 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
SDC1P18827 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.29□□□□□ -2.04
SDC1P18827 Y_RNA.77-201ENST00000362962 107 ntBASIC2.29□□□□□ -2.04
SDC1P18827 SNORA80A-201ENST00000363922 136 ntBASIC2.29□□□□□ -2.04
SDC1P18827 RNU6-61P-201ENST00000365528 109 ntBASIC2.29□□□□□ -2.04
SDC1P18827 AL359511.1-201ENST00000402970 211 ntBASIC2.29□□□□□ -2.04
SDC1P18827 RNU6-1025P-201ENST00000410629 104 ntBASIC2.29□□□□□ -2.04
SDC1P18827 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
SDC1P18827 NUP35P1-201ENST00000422734 947 ntBASIC2.29□□□□□ -2.04
SDC1P18827 MYL8P-204ENST00000431574 518 ntBASIC2.29□□□□□ -2.04
SDC1P18827 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.29□□□□□ -2.04
SDC1P18827 MTND1P27-201ENST00000451117 902 ntBASIC2.29□□□□□ -2.04
SDC1P18827 AC108938.1-201ENST00000451204 136 ntBASIC2.29□□□□□ -2.04
SDC1P18827 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.29□□□□□ -2.04
SDC1P18827 AC128713.1-201ENST00000471495 306 ntBASIC2.29□□□□□ -2.04
SDC1P18827 TRBV1-201ENST00000476502 284 ntBASIC2.29□□□□□ -2.04
SDC1P18827 RPS15AP34-201ENST00000487776 387 ntBASIC2.29□□□□□ -2.04
SDC1P18827 AC096576.1-201ENST00000489014 359 ntBASIC2.29□□□□□ -2.04
SDC1P18827 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.29□□□□□ -2.04
SDC1P18827 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.29□□□□□ -2.04
SDC1P18827 RNU6-572P-201ENST00000516724 80 ntBASIC2.29□□□□□ -2.04
SDC1P18827 RNA5SP402-201ENST00000517148 110 ntBASIC2.29□□□□□ -2.04
SDC1P18827 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC2.29□□□□□ -2.04
SDC1P18827 AP001646.1-201ENST00000527936 915 ntBASIC2.29□□□□□ -2.04
SDC1P18827 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.29□□□□□ -2.04
SDC1P18827 AL157871.3-201ENST00000557231 293 ntBASIC2.29□□□□□ -2.04
SDC1P18827 AP005136.1-201ENST00000579765 429 ntBASIC2.29□□□□□ -2.04
SDC1P18827 LARP7P3-201ENST00000579888 337 ntBASIC2.29□□□□□ -2.04
SDC1P18827 MIR5194-201ENST00000582634 120 ntBASIC2.29□□□□□ -2.04
SDC1P18827 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.29□□□□□ -2.04
SDC1P18827 OR1M4P-201ENST00000589199 287 ntBASIC2.29□□□□□ -2.04
SDC1P18827 AC005261.5-201ENST00000596280 355 ntBASIC2.29□□□□□ -2.04
SDC1P18827 AC119751.7-201ENST00000600494 245 ntBASIC2.29□□□□□ -2.04
SDC1P18827 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC2.29□□□□□ -2.04
SDC1P18827 AL158032.1-201ENST00000605401 106 ntBASIC2.29□□□□□ -2.04
SDC1P18827 AC104237.2-201ENST00000612456 443 ntBASIC2.29□□□□□ -2.04
SDC1P18827 AL359547.2-201ENST00000615810 418 ntBASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms