Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AP001893.2-201ENST00000526949 202 ntBASIC3.21□□□□□ -1.9
HOXC11O43248 AC022080.3-201ENST00000544433 482 ntBASIC3.21□□□□□ -1.9
HOXC11O43248 AC006199.1-201ENST00000548728 219 ntBASIC3.21□□□□□ -1.9
HOXC11O43248 CYCSP39-201ENST00000565821 309 ntBASIC3.21□□□□□ -1.9
HOXC11O43248 LARP7P3-201ENST00000579888 337 ntBASIC3.21□□□□□ -1.9
HOXC11O43248 AC008752.3-201ENST00000588113 712 ntBASIC3.21□□□□□ -1.9
HOXC11O43248 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXC11O43248 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXC11O43248 AL645944.1-201ENST00000603857 493 ntBASIC3.21□□□□□ -1.9
HOXC11O43248 AL354950.2-201ENST00000617939 290 ntBASIC3.21□□□□□ -1.9
HOXC11O43248 AC010889.1-201ENST00000566193 2666 ntBASIC3.21□□□□□ -1.9
HOXC11O43248 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
HOXC11O43248 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
HOXC11O43248 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXC11O43248 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
HOXC11O43248 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXC11O43248 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXC11O43248 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXC11O43248 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXC11O43248 RNU6-1085P-201ENST00000363576 107 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 RNU6-996P-201ENST00000365438 107 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 RNU6-517P-201ENST00000384362 110 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 RNU6-166P-201ENST00000384371 107 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 SNORD15B-201ENST00000384714 146 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 MIR578-201ENST00000384828 96 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 MIR34A-201ENST00000385130 110 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 AC068050.1-201ENST00000394891 380 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 AL031121.1-201ENST00000406553 254 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 Y_RNA.623-201ENST00000411128 95 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 EEF1A1P40-201ENST00000412883 573 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXC11O43248 RPL7P10-201ENST00000417407 739 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 RPL35AP12-201ENST00000425362 338 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 TOMM20P4-201ENST00000427861 435 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 AL627311.1-201ENST00000431514 115 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 AL161651.1-201ENST00000440882 223 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXC11O43248 SNRPFP3-201ENST00000457792 225 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 SNORA59A-201ENST00000459326 152 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 RPL31P41-201ENST00000477967 372 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC3.2□□□□□ -1.9
HOXC11O43248 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXC11O43248 MRPS36P2-201ENST00000512569 299 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 SNORA64.4-201ENST00000516632 81 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 RNU6-1178P-201ENST00000516674 107 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 SNORD19.2-201ENST00000516978 73 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 RNU6-56P-201ENST00000516986 93 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXC11O43248 AC078899.3-201ENST00000599065 212 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXC11O43248 ATP5A1P2-202ENST00000616464 443 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXC11O43248 SCARNA15.3-201ENST00000626315 122 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 SCARNA4.1-201ENST00000628597 123 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXC11O43248 AC004944.1-201ENST00000517807 3059 ntBASIC3.2□□□□□ -1.9
HOXC11O43248 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
HOXC11O43248 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXC11O43248 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
HOXC11O43248 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
HOXC11O43248 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
HOXC11O43248 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
HOXC11O43248 RNU6-371P-201ENST00000364283 108 ntBASIC3.19□□□□□ -1.9
HOXC11O43248 RNU6-1280P-201ENST00000365211 107 ntBASIC3.19□□□□□ -1.9
HOXC11O43248 Y_RNA.409-201ENST00000383990 98 ntBASIC3.19□□□□□ -1.9
HOXC11O43248 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
HOXC11O43248 AL031779.1-201ENST00000415663 330 ntBASIC3.19□□□□□ -1.9
HOXC11O43248 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXC11O43248 AL353193.1-201ENST00000421444 268 ntBASIC3.19□□□□□ -1.9
HOXC11O43248 COTL1P1-201ENST00000422309 375 ntBASIC3.19□□□□□ -1.9
HOXC11O43248 AC009296.1-201ENST00000443146 155 ntBASIC3.19□□□□□ -1.9
HOXC11O43248 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXC11O43248 Z96811.1-201ENST00000445880 108 ntBASIC3.19□□□□□ -1.9
HOXC11O43248 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXC11O43248 AC092436.1-201ENST00000506450 503 ntBASIC3.19□□□□□ -1.9
HOXC11O43248 SEM1P1-201ENST00000506694 209 ntBASIC3.19□□□□□ -1.9
HOXC11O43248 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXC11O43248 RNA5SP385-201ENST00000515947 110 ntBASIC3.19□□□□□ -1.9
HOXC11O43248 AC104027.1-201ENST00000521887 300 ntBASIC3.19□□□□□ -1.9
HOXC11O43248 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXC11O43248 MTATP6P3-201ENST00000581686 676 ntBASIC3.19□□□□□ -1.9
HOXC11O43248 AC020895.1-201ENST00000595362 272 ntBASIC3.19□□□□□ -1.9
HOXC11O43248 AC006386.2-201ENST00000624491 75 ntBASIC3.19□□□□□ -1.9
HOXC11O43248 AC012005.1-201ENST00000624575 75 ntBASIC3.19□□□□□ -1.9
HOXC11O43248 AC073476.4-201ENST00000628409 72 ntBASIC3.19□□□□□ -1.9
HOXC11O43248 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.19□□□□□ -1.9
HOXC11O43248 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXC11O43248 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXC11O43248 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
HOXC11O43248 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXC11O43248 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXC11O43248 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
HOXC11O43248 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HOXC11O43248 AL035425.3-201ENST00000564206 4996 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 SNORD56.3-201ENST00000363507 71 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 RNU6-1322P-201ENST00000364309 107 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 SNORA71.1-201ENST00000364523 117 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 RNU6-898P-201ENST00000365627 104 ntBASIC3.18□□□□□ -1.9
HOXC11O43248 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXC11O43248 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms