Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 BX679664.1-201ENST00000434429 253 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 BRK1P2-201ENST00000442875 223 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 Y_RNA.675-201ENST00000516389 149 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 RNU6-566P-201ENST00000516790 107 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 AC087854.1-201ENST00000519706 414 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 GLYCAM1-201ENST00000546596 285 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 SYF2P1-201ENST00000550658 413 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 MIR5685-201ENST00000579080 79 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 AC002044.1-201ENST00000606707 158 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 AL138726.1-201ENST00000614873 333 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 AC099506.2-201ENST00000623074 221 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 AC022140.2-201ENST00000623500 188 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 AC034229.5-201ENST00000624258 185 ntBASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.69□□□□□ -1.82
PCDHA3Q9Y5H8 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 PWAR6-201ENST00000552334 4618 ntBASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 RNU4-79P-201ENST00000362764 141 ntBASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 RNA5SP51-201ENST00000364750 119 ntBASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 RNU6-1303P-201ENST00000364841 107 ntBASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 U8.11-201ENST00000384699 133 ntBASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 U8.12-201ENST00000384701 133 ntBASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 RPL21P17-201ENST00000397467 475 ntBASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 AL591034.1-201ENST00000407447 340 ntBASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 RN7SKP202-201ENST00000410439 330 ntBASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 RPS29P7-201ENST00000439662 171 ntBASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 U8.18-201ENST00000459285 133 ntBASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 MIR892C-201ENST00000516410 77 ntBASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 SNORA70.19-201ENST00000516717 90 ntBASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 AC069113.1-201ENST00000517763 267 ntBASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 AC025755.1-201ENST00000521306 278 ntBASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 MIR5047-201ENST00000579212 100 ntBASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 MIR1254-2-201ENST00000579553 63 ntBASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 AC007938.3-201ENST00000604965 623 ntBASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 AC113139.1-201ENST00000605049 239 ntBASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 FTX_3.1-201ENST00000610451 147 ntBASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 U6.98-201ENST00000637157 84 ntBASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 MIR1302-1-201ENST00000637932 143 ntBASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 AC005183.1-201ENST00000603687 1979 ntBASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
PCDHA3Q9Y5H8 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 FTLP6-201ENST00000355274 422 ntBASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 Y_RNA.813-201ENST00000364639 102 ntBASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 SNORD116-11-201ENST00000383882 92 ntBASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 MIR554-201ENST00000384874 96 ntBASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 MIR134-201ENST00000385258 73 ntBASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 SNORA40C-201ENST00000391285 128 ntBASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 MIR548K-201ENST00000408406 116 ntBASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 AC005019.1-201ENST00000436455 431 ntBASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 RPL32P28-201ENST00000443577 397 ntBASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 AC011005.2-201ENST00000487324 359 ntBASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 UBE2CP3-201ENST00000502715 450 ntBASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 HMGB3P15-201ENST00000507326 574 ntBASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 RNU1-86P-201ENST00000516108 154 ntBASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 Y_RNA.682-201ENST00000516457 100 ntBASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 RNU1-107P-201ENST00000516617 154 ntBASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 RNA5SP454-201ENST00000517231 127 ntBASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 HMGB1P14-201ENST00000557424 591 ntBASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 AL355375.2-201ENST00000574825 175 ntBASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 AC119674.1-207ENST00000641355 633 ntBASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 FAM35BP-202ENST00000497389 3337 ntBASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 AC007823.1-201ENST00000569932 1566 ntBASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
PCDHA3Q9Y5H8 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
PCDHA3Q9Y5H8 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
PCDHA3Q9Y5H8 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
PCDHA3Q9Y5H8 SNORD9-201ENST00000362566 104 ntBASIC3.66□□□□□ -1.82
PCDHA3Q9Y5H8 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms