Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 SNORA51.1-201ENST00000363243 140 ntBASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 RNU1-19P-201ENST00000363306 165 ntBASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 Y_RNA.163-201ENST00000363702 113 ntBASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 SNORD45.3-201ENST00000363836 72 ntBASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 Y_RNA.341-201ENST00000365341 102 ntBASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 RN7SKP81-201ENST00000365603 331 ntBASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 RNU6-1264P-201ENST00000383891 107 ntBASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 Y_RNA.456-201ENST00000384232 111 ntBASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 RNU6-1152P-201ENST00000384576 107 ntBASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 RNU6-136P-201ENST00000384663 107 ntBASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 RNU6-813P-201ENST00000384691 107 ntBASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 MIR29B2-201ENST00000385055 81 ntBASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 RNU6-837P-201ENST00000391056 108 ntBASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 AL603914.1-201ENST00000401964 204 ntBASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 RNU6-855P-201ENST00000410395 104 ntBASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 RNU2-68P-201ENST00000410878 191 ntBASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 SCARNA20.4-201ENST00000516969 131 ntBASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 AC021231.3-201ENST00000558497 370 ntBASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 RN7SL356P-201ENST00000582228 248 ntBASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 ZNF720P1-201ENST00000562403 1939 ntBASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS9D1Q9Y2B5 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 AC133552.1-201ENST00000569988 4007 ntBASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 MIR488-201ENST00000365739 83 ntBASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 Y_RNA.622-201ENST00000411091 108 ntBASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 RPL7AP49-201ENST00000429522 581 ntBASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 AL591438.1-201ENST00000433508 581 ntBASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 RN7SL72P-201ENST00000460697 269 ntBASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 RN7SL174P-201ENST00000475578 289 ntBASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 UBE2Q2P9-201ENST00000490086 202 ntBASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 SCARNA15.2-201ENST00000516409 127 ntBASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 Y_RNA.690-201ENST00000516603 95 ntBASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 CYP4A27P-201ENST00000567218 190 ntBASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 MIR4505-201ENST00000582238 73 ntBASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
VPS9D1Q9Y2B5 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 RNU1-62P-201ENST00000362599 164 ntBASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 SNORD115-30-201ENST00000364117 82 ntBASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 RN7SKP153-201ENST00000365026 316 ntBASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 RNU6-1074P-201ENST00000383995 104 ntBASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 SNORA17A-201ENST00000391185 133 ntBASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 RN7SKP229-201ENST00000410465 302 ntBASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 RN7SKP61-201ENST00000410642 295 ntBASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 RN7SKP206-201ENST00000410823 293 ntBASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 GNG5P5-201ENST00000420444 220 ntBASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 AC064862.4-201ENST00000442180 334 ntBASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 AC092754.1-201ENST00000472975 479 ntBASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 AC098976.1-201ENST00000513014 541 ntBASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.4□□□□□ -1.54
VPS9D1Q9Y2B5 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC5.4□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms