Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC105245.1-201ENST00000581934 244 ntBASIC2.42□□□□□ -2.02
FOXA2Q9Y261 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC2.42□□□□□ -2.02
FOXA2Q9Y261 AC040904.1-201ENST00000590850 223 ntBASIC2.42□□□□□ -2.02
FOXA2Q9Y261 AL670379.10-201ENST00000604330 253 ntBASIC2.42□□□□□ -2.02
FOXA2Q9Y261 AL670379.9-201ENST00000605428 253 ntBASIC2.42□□□□□ -2.02
FOXA2Q9Y261 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
FOXA2Q9Y261 AC008147.4-201ENST00000617570 1204 ntBASIC2.42□□□□□ -2.02
FOXA2Q9Y261 AC093648.1-201ENST00000623546 606 ntBASIC2.42□□□□□ -2.02
FOXA2Q9Y261 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.42□□□□□ -2.02
FOXA2Q9Y261 AC092656.1-203ENST00000624134 423 ntBASIC2.42□□□□□ -2.02
FOXA2Q9Y261 MIR3974-201ENST00000637126 96 ntBASIC2.42□□□□□ -2.02
FOXA2Q9Y261 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
FOXA2Q9Y261 AC108206.1-201ENST00000570186 4159 ntBASIC2.42□□□□□ -2.02
FOXA2Q9Y261 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
FOXA2Q9Y261 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.41□□□□□ -2.02
FOXA2Q9Y261 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC2.41□□□□□ -2.02
FOXA2Q9Y261 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
FOXA2Q9Y261 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.41□□□□□ -2.02
FOXA2Q9Y261 AC138393.1-203ENST00000327086 343 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 SNORD3E-201ENST00000362899 217 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 VTRNA1-1-201ENST00000363120 99 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 RNA5SP387-201ENST00000364226 106 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 SNORA70.4-201ENST00000365509 134 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 MIR10A-201ENST00000385043 110 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 MIR34A-201ENST00000385130 110 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 AL133475.1-201ENST00000404414 305 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 ERMN-204ENST00000409925 556 ntTSL 4 BASIC2.41□□□□□ -2.02
FOXA2Q9Y261 AL451074.5-201ENST00000415894 435 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 AC016831.2-201ENST00000417179 352 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 MTCO3P30-201ENST00000426425 670 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 TOMM20P4-201ENST00000427861 435 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 CALM2P2-201ENST00000428512 440 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 AC098826.1-201ENST00000433943 471 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.41□□□□□ -2.02
FOXA2Q9Y261 KATNBL1P3-201ENST00000443475 909 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
FOXA2Q9Y261 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC2.41□□□□□ -2.02
FOXA2Q9Y261 RPS29P2-201ENST00000479278 136 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 AC011005.2-201ENST00000487324 359 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC2.41□□□□□ -2.02
FOXA2Q9Y261 AC010486.3-201ENST00000511602 785 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.41□□□□□ -2.02
FOXA2Q9Y261 SNORA25.11-201ENST00000515935 105 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.41□□□□□ -2.02
FOXA2Q9Y261 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.41□□□□□ -2.02
FOXA2Q9Y261 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC2.41□□□□□ -2.02
FOXA2Q9Y261 OR5AQ1P-201ENST00000527596 927 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 AP002404.1-201ENST00000532005 451 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.41□□□□□ -2.02
FOXA2Q9Y261 AC025678.1-201ENST00000567861 338 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 AC012213.3-201ENST00000577199 777 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 MIR5571-201ENST00000577998 113 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 MIR5692A1-201ENST00000580523 69 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.41□□□□□ -2.02
FOXA2Q9Y261 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
FOXA2Q9Y261 AL442067.2-201ENST00000614033 363 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 AL158063.1-201ENST00000615349 536 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 HMGB1P24-202ENST00000615653 685 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 AC072046.2-201ENST00000618366 268 ntBASIC2.41□□□□□ -2.02
FOXA2Q9Y261 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.41□□□□□ -2.02
FOXA2Q9Y261 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.41□□□□□ -2.02
FOXA2Q9Y261 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
FOXA2Q9Y261 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.41□□□□□ -2.02
FOXA2Q9Y261 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
FOXA2Q9Y261 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.4□□□□□ -2.02
FOXA2Q9Y261 Z75746.1-201ENST00000440243 2080 ntBASIC2.4□□□□□ -2.02
FOXA2Q9Y261 MTND5P17-201ENST00000418405 1603 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC2.4□□□□□ -2.03
FOXA2Q9Y261 MIR22-201ENST00000362190 85 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 RNA5SP374-201ENST00000362939 125 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 Y_RNA.333-201ENST00000365274 102 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 Y_RNA.367-201ENST00000365544 101 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 Y_RNA.576-201ENST00000384781 102 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 FTH1P15-201ENST00000406984 280 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 U3.37-201ENST00000408528 213 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC2.4□□□□□ -2.03
FOXA2Q9Y261 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC2.4□□□□□ -2.03
FOXA2Q9Y261 AC090960.1-201ENST00000421072 306 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.4□□□□□ -2.03
FOXA2Q9Y261 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.4□□□□□ -2.03
FOXA2Q9Y261 AC093151.1-201ENST00000427711 313 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC2.4□□□□□ -2.03
FOXA2Q9Y261 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2.4□□□□□ -2.03
FOXA2Q9Y261 MTCYBP1-201ENST00000454315 1119 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC2.4□□□□□ -2.03
FOXA2Q9Y261 snoU109.2-201ENST00000459316 135 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 RPL21P41-201ENST00000459863 264 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.4□□□□□ -2.03
FOXA2Q9Y261 AC096576.1-201ENST00000489014 359 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 AC104806.1-201ENST00000508720 308 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 AC098799.2-201ENST00000509466 868 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.4□□□□□ -2.03
FOXA2Q9Y261 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.4□□□□□ -2.03
FOXA2Q9Y261 AC114781.4-201ENST00000513707 639 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 RN7SKP57-201ENST00000517248 293 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC2.4□□□□□ -2.03
FOXA2Q9Y261 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.4□□□□□ -2.03
FOXA2Q9Y261 MIR4658-201ENST00000584344 65 ntBASIC2.4□□□□□ -2.03
FOXA2Q9Y261 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.4□□□□□ -2.03
FOXA2Q9Y261 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC2.4□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms