Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
DKK3Q9UBP4 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.68□□□□□ -1.82
DKK3Q9UBP4 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
DKK3Q9UBP4 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.68□□□□□ -1.82
DKK3Q9UBP4 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
DKK3Q9UBP4 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.67□□□□□ -1.82
DKK3Q9UBP4 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
DKK3Q9UBP4 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
DKK3Q9UBP4 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
DKK3Q9UBP4 RNU6-254P-201ENST00000363377 107 ntBASIC3.67□□□□□ -1.82
DKK3Q9UBP4 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC3.67□□□□□ -1.82
DKK3Q9UBP4 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
DKK3Q9UBP4 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.67□□□□□ -1.82
DKK3Q9UBP4 AF228730.4-201ENST00000421457 183 ntBASIC3.67□□□□□ -1.82
DKK3Q9UBP4 MTCO1P39-201ENST00000426148 480 ntBASIC3.67□□□□□ -1.82
DKK3Q9UBP4 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC3.67□□□□□ -1.82
DKK3Q9UBP4 CYCSP4-201ENST00000429682 331 ntBASIC3.67□□□□□ -1.82
DKK3Q9UBP4 HMGB3P11-201ENST00000440127 604 ntBASIC3.67□□□□□ -1.82
DKK3Q9UBP4 RPL26P6-201ENST00000440913 438 ntBASIC3.67□□□□□ -1.82
DKK3Q9UBP4 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.67□□□□□ -1.82
DKK3Q9UBP4 AC104058.1-201ENST00000448028 297 ntBASIC3.67□□□□□ -1.82
DKK3Q9UBP4 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.67□□□□□ -1.82
DKK3Q9UBP4 RPL7P5-201ENST00000471472 736 ntBASIC3.67□□□□□ -1.82
DKK3Q9UBP4 HIGD1AP13-201ENST00000509878 289 ntBASIC3.67□□□□□ -1.82
DKK3Q9UBP4 RNU6-677P-201ENST00000516914 101 ntBASIC3.67□□□□□ -1.82
DKK3Q9UBP4 RNU6-711P-201ENST00000517255 106 ntBASIC3.67□□□□□ -1.82
DKK3Q9UBP4 AC008489.1-201ENST00000524271 483 ntBASIC3.67□□□□□ -1.82
DKK3Q9UBP4 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.67□□□□□ -1.82
DKK3Q9UBP4 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC3.67□□□□□ -1.82
DKK3Q9UBP4 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.67□□□□□ -1.82
DKK3Q9UBP4 RPL23AP84-201ENST00000571193 464 ntBASIC3.67□□□□□ -1.82
DKK3Q9UBP4 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC3.67□□□□□ -1.82
DKK3Q9UBP4 BRDTP1-201ENST00000605735 677 ntBASIC3.67□□□□□ -1.82
DKK3Q9UBP4 AC007619.2-201ENST00000605743 379 ntBASIC3.67□□□□□ -1.82
DKK3Q9UBP4 MTND5P42-201ENST00000637720 498 ntBASIC3.67□□□□□ -1.82
DKK3Q9UBP4 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
DKK3Q9UBP4 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.67□□□□□ -1.82
DKK3Q9UBP4 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
DKK3Q9UBP4 ZNF736P3Y-201ENST00000428264 1465 ntBASIC3.67□□□□□ -1.82
DKK3Q9UBP4 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
DKK3Q9UBP4 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
DKK3Q9UBP4 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
DKK3Q9UBP4 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
DKK3Q9UBP4 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
DKK3Q9UBP4 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
DKK3Q9UBP4 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.66□□□□□ -1.82
DKK3Q9UBP4 RNU6-1074P-201ENST00000383995 104 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 SNORA36C-201ENST00000384289 132 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 RNU6-1297P-201ENST00000384415 104 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 MIR218-2-201ENST00000385006 110 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.66□□□□□ -1.82
DKK3Q9UBP4 AC096664.2-201ENST00000411843 406 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 AC074085.1-201ENST00000413598 418 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.66□□□□□ -1.82
DKK3Q9UBP4 BX682237.1-201ENST00000415016 335 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
DKK3Q9UBP4 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.66□□□□□ -1.82
DKK3Q9UBP4 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC3.66□□□□□ -1.82
DKK3Q9UBP4 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.66□□□□□ -1.82
DKK3Q9UBP4 RPS3AP52-201ENST00000435639 297 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.66□□□□□ -1.82
DKK3Q9UBP4 GTF2IP13-201ENST00000438487 386 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.66□□□□□ -1.82
DKK3Q9UBP4 PRDX3P3-201ENST00000447765 522 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 FABP5P13-201ENST00000452144 328 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 Y_RNA.635-201ENST00000459041 101 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 RNU6-953P-201ENST00000459154 107 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 RPS26P21-201ENST00000475397 348 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 AC104619.4-201ENST00000510773 249 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.66□□□□□ -1.82
DKK3Q9UBP4 Y_RNA.689-201ENST00000516589 107 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 RNU6-256P-201ENST00000516747 97 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 RNU6-566P-201ENST00000516790 107 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 RNU6-1088P-201ENST00000516850 104 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 ERHP1-201ENST00000523006 310 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC3.66□□□□□ -1.82
DKK3Q9UBP4 AP005597.4-201ENST00000526762 229 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 AP000763.2-201ENST00000540641 163 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.66□□□□□ -1.82
DKK3Q9UBP4 AC090115.3-201ENST00000553218 849 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.66□□□□□ -1.82
DKK3Q9UBP4 AC106782.4-201ENST00000568264 210 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 MIR3941-201ENST00000582572 103 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.66□□□□□ -1.82
DKK3Q9UBP4 AL670379.4-201ENST00000605279 254 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 AC004832.5-201ENST00000608677 401 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 AC119674.1-207ENST00000641355 633 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.66□□□□□ -1.82
DKK3Q9UBP4 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.66□□□□□ -1.82
DKK3Q9UBP4 SDAD1P2-201ENST00000441308 2028 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 AC004944.1-201ENST00000517807 3059 ntBASIC3.66□□□□□ -1.82
DKK3Q9UBP4 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
DKK3Q9UBP4 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.82
DKK3Q9UBP4 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
DKK3Q9UBP4 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.65□□□□□ -1.82
DKK3Q9UBP4 SNORD9-201ENST00000362566 104 ntBASIC3.65□□□□□ -1.83
DKK3Q9UBP4 Y_RNA.259-201ENST00000364619 101 ntBASIC3.65□□□□□ -1.83
DKK3Q9UBP4 RNU6-190P-201ENST00000384154 102 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms