Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 AC027673.1-201ENST00000456245 405 ntBASIC3.42□□□□□ -1.86
USP38Q8NB14 snoU13.26-201ENST00000459452 105 ntBASIC3.42□□□□□ -1.86
USP38Q8NB14 RNA5SP367-201ENST00000516557 118 ntBASIC3.42□□□□□ -1.86
USP38Q8NB14 RNA5SP503-201ENST00000517047 117 ntBASIC3.42□□□□□ -1.86
USP38Q8NB14 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.42□□□□□ -1.86
USP38Q8NB14 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.42□□□□□ -1.86
USP38Q8NB14 ZDHHC20P3-201ENST00000531576 336 ntBASIC3.42□□□□□ -1.86
USP38Q8NB14 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.42□□□□□ -1.86
USP38Q8NB14 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.42□□□□□ -1.86
USP38Q8NB14 AL359212.1-201ENST00000556608 614 ntBASIC3.42□□□□□ -1.86
USP38Q8NB14 AC068135.2-201ENST00000569293 1028 ntBASIC3.42□□□□□ -1.86
USP38Q8NB14 ATP1B3P1-201ENST00000605365 821 ntBASIC3.42□□□□□ -1.86
USP38Q8NB14 AC122108.2-201ENST00000611946 526 ntBASIC3.42□□□□□ -1.86
USP38Q8NB14 MIR7111-201ENST00000619751 72 ntBASIC3.42□□□□□ -1.86
USP38Q8NB14 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC3.42□□□□□ -1.86
USP38Q8NB14 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.42□□□□□ -1.86
USP38Q8NB14 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
USP38Q8NB14 MTND5P17-201ENST00000418405 1603 ntBASIC3.41□□□□□ -1.86
USP38Q8NB14 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.41□□□□□ -1.86
USP38Q8NB14 Y_RNA.372-201ENST00000365599 102 ntBASIC3.41□□□□□ -1.86
USP38Q8NB14 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
USP38Q8NB14 RNU6-116P-201ENST00000384042 109 ntBASIC3.41□□□□□ -1.86
USP38Q8NB14 SNORA46-201ENST00000384762 135 ntBASIC3.41□□□□□ -1.86
USP38Q8NB14 CALM2P3-201ENST00000400429 449 ntBASIC3.41□□□□□ -1.86
USP38Q8NB14 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.41□□□□□ -1.86
USP38Q8NB14 OR51A5P-201ENST00000415429 942 ntBASIC3.41□□□□□ -1.86
USP38Q8NB14 AC099548.1-201ENST00000421443 426 ntBASIC3.41□□□□□ -1.86
USP38Q8NB14 AL353193.1-201ENST00000421444 268 ntBASIC3.41□□□□□ -1.86
USP38Q8NB14 SNRPEP9-201ENST00000436794 238 ntBASIC3.41□□□□□ -1.86
USP38Q8NB14 AC010099.1-201ENST00000455434 375 ntBASIC3.41□□□□□ -1.86
USP38Q8NB14 AL162395.1-201ENST00000457882 422 ntBASIC3.41□□□□□ -1.86
USP38Q8NB14 RN7SL75P-201ENST00000461926 281 ntBASIC3.41□□□□□ -1.86
USP38Q8NB14 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.41□□□□□ -1.86
USP38Q8NB14 SNORA31.1-201ENST00000515993 133 ntBASIC3.41□□□□□ -1.86
USP38Q8NB14 SNORA31.5-201ENST00000516190 133 ntBASIC3.41□□□□□ -1.86
USP38Q8NB14 RNU6-914P-201ENST00000516749 109 ntBASIC3.41□□□□□ -1.86
USP38Q8NB14 RN7SKP282-201ENST00000516824 299 ntBASIC3.41□□□□□ -1.86
USP38Q8NB14 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.41□□□□□ -1.86
USP38Q8NB14 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC3.41□□□□□ -1.86
USP38Q8NB14 MTCO3P24-201ENST00000572729 782 ntBASIC3.41□□□□□ -1.86
USP38Q8NB14 MIR15A-201ENST00000607334 83 ntBASIC3.41□□□□□ -1.86
USP38Q8NB14 AP001596.2-201ENST00000608410 312 ntBASIC3.41□□□□□ -1.86
USP38Q8NB14 AL591516.1-201ENST00000611326 274 ntBASIC3.41□□□□□ -1.86
USP38Q8NB14 AC013562.2-201ENST00000611632 603 ntBASIC3.41□□□□□ -1.86
USP38Q8NB14 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3.41□□□□□ -1.86
USP38Q8NB14 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.41□□□□□ -1.86
USP38Q8NB14 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.41□□□□□ -1.86
USP38Q8NB14 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.86
USP38Q8NB14 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.4□□□□□ -1.86
USP38Q8NB14 RNU6-270P-201ENST00000364131 105 ntBASIC3.4□□□□□ -1.87
USP38Q8NB14 SNORD115-7-201ENST00000365306 82 ntBASIC3.4□□□□□ -1.87
USP38Q8NB14 RNU6-1029P-201ENST00000384109 107 ntBASIC3.4□□□□□ -1.87
USP38Q8NB14 RNU6-217P-201ENST00000384164 104 ntBASIC3.4□□□□□ -1.87
USP38Q8NB14 AL139039.1-201ENST00000401900 692 ntBASIC3.4□□□□□ -1.87
USP38Q8NB14 RNU2-68P-201ENST00000410878 191 ntBASIC3.4□□□□□ -1.87
USP38Q8NB14 AC080125.1-201ENST00000414888 684 ntBASIC3.4□□□□□ -1.87
USP38Q8NB14 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.4□□□□□ -1.87
USP38Q8NB14 MTCO3P30-201ENST00000426425 670 ntBASIC3.4□□□□□ -1.87
USP38Q8NB14 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.4□□□□□ -1.87
USP38Q8NB14 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC3.4□□□□□ -1.87
USP38Q8NB14 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.4□□□□□ -1.87
USP38Q8NB14 RNU7-63P-201ENST00000459054 62 ntBASIC3.4□□□□□ -1.87
USP38Q8NB14 RPS26P21-201ENST00000475397 348 ntBASIC3.4□□□□□ -1.87
USP38Q8NB14 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.4□□□□□ -1.87
USP38Q8NB14 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC3.4□□□□□ -1.87
USP38Q8NB14 AC009646.1-201ENST00000510455 318 ntBASIC3.4□□□□□ -1.87
USP38Q8NB14 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC3.4□□□□□ -1.87
USP38Q8NB14 SNORD27.1-201ENST00000516319 72 ntBASIC3.4□□□□□ -1.87
USP38Q8NB14 RN7SKP272-201ENST00000516988 232 ntBASIC3.4□□□□□ -1.87
USP38Q8NB14 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.4□□□□□ -1.87
USP38Q8NB14 AP001893.2-201ENST00000526949 202 ntBASIC3.4□□□□□ -1.87
USP38Q8NB14 HMGB1P14-201ENST00000557424 591 ntBASIC3.4□□□□□ -1.87
USP38Q8NB14 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.4□□□□□ -1.87
USP38Q8NB14 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
USP38Q8NB14 CR381653.2-201ENST00000624041 768 ntBASIC3.4□□□□□ -1.87
USP38Q8NB14 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
USP38Q8NB14 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.87
USP38Q8NB14 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.4□□□□□ -1.87
USP38Q8NB14 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
USP38Q8NB14 ASNSP3-201ENST00000451989 1306 ntBASIC3.4□□□□□ -1.87
USP38Q8NB14 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
USP38Q8NB14 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
USP38Q8NB14 CKAP2P1-201ENST00000555477 2049 ntBASIC3.39□□□□□ -1.87
USP38Q8NB14 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
USP38Q8NB14 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC3.39□□□□□ -1.87
USP38Q8NB14 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.39□□□□□ -1.87
USP38Q8NB14 RNU6-1085P-201ENST00000363576 107 ntBASIC3.39□□□□□ -1.87
USP38Q8NB14 SNORA4.3-201ENST00000365564 137 ntBASIC3.39□□□□□ -1.87
USP38Q8NB14 AL590002.1-201ENST00000406554 418 ntBASIC3.39□□□□□ -1.87
USP38Q8NB14 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.39□□□□□ -1.87
USP38Q8NB14 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.39□□□□□ -1.87
USP38Q8NB14 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC3.39□□□□□ -1.87
USP38Q8NB14 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC3.39□□□□□ -1.87
USP38Q8NB14 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.39□□□□□ -1.87
USP38Q8NB14 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.39□□□□□ -1.87
USP38Q8NB14 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.39□□□□□ -1.87
USP38Q8NB14 RPL7P54-201ENST00000438336 674 ntBASIC3.39□□□□□ -1.87
USP38Q8NB14 RPS24P13-201ENST00000442520 397 ntBASIC3.39□□□□□ -1.87
USP38Q8NB14 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC3.39□□□□□ -1.87
USP38Q8NB14 RPL23AP20-201ENST00000447965 421 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 122.5 ms