Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 Y_RNA.493-201ENST00000384422 102 ntBASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 RNA5SP56-201ENST00000410277 118 ntBASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 AC099677.1-201ENST00000420575 175 ntBASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 RPL21P109-201ENST00000422213 475 ntBASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 RPL7P37-201ENST00000425095 738 ntBASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 AL669831.1-202ENST00000428504 417 ntBASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 AC010469.1-201ENST00000463864 576 ntBASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 RN7SL807P-201ENST00000470923 297 ntBASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 AC117503.1-201ENST00000472241 394 ntBASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 RN7SL504P-201ENST00000494496 287 ntBASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 RNU6-390P-201ENST00000516259 103 ntBASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 SNORD116.3-201ENST00000517176 78 ntBASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 AC087854.1-201ENST00000519706 414 ntBASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 AC104763.2-201ENST00000604179 382 ntBASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 NAA50-211ENST00000630058 177 ntTSL 5 BASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 CDC27P3-201ENST00000635418 1910 ntBASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 AC073073.2-201ENST00000609827 2578 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 SNORD62.1-201ENST00000362541 86 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 SNORA38.1-201ENST00000364172 131 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 Y_RNA.428-201ENST00000384078 102 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 RNU6-214P-201ENST00000384130 107 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 Y_RNA.473-201ENST00000384333 102 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 Y_RNA.496-201ENST00000384444 101 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 Y_RNA.574-201ENST00000384766 95 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 MTHFD2P2-201ENST00000407725 247 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 Z99755.1-201ENST00000414048 380 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 USP9YP16-201ENST00000430287 407 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 Z75741.1-201ENST00000446793 314 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 GSTA11P-201ENST00000452866 669 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 USP9YP23-201ENST00000455085 407 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 SNORD5.1-201ENST00000458800 75 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 RN7SL283P-201ENST00000489055 303 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 AC116655.1-201ENST00000508324 901 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 AC026801.2-201ENST00000515352 425 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 HIGD1AP3-201ENST00000515857 278 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 RNU6-635P-201ENST00000516651 102 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 RN7SKP234-201ENST00000517173 224 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 AP006587.4-201ENST00000526053 529 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 AP003385.6-201ENST00000531603 374 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 GNAI2P1-201ENST00000541815 315 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 AC067852.3-201ENST00000589177 561 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 AC104695.3-201ENST00000604052 296 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 AC015813.4-201ENST00000610469 179 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.63□□□□□ -1.67
USHBP1Q8N6Y0 AC005592.1-201ENST00000566527 1640 ntBASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 RNA5SP374-201ENST00000362939 125 ntBASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 RNU1-115P-201ENST00000365329 160 ntBASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 RHOT1P2-201ENST00000366423 333 ntBASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 Y_RNA.556-201ENST00000384677 113 ntBASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 RNU6-95P-201ENST00000384697 107 ntBASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 AL139039.1-201ENST00000401900 692 ntBASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 SNORA11.2-201ENST00000408318 127 ntBASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 HMGB1P12-201ENST00000438594 598 ntBASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 Z98949.2-201ENST00000440996 144 ntBASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 NEFMP1-201ENST00000443423 1006 ntBASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 CECR9-201ENST00000453421 199 ntBASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 AC092451.1-201ENST00000480211 153 ntBASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 AC096745.1-201ENST00000509945 370 ntBASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 PHBP14-201ENST00000512887 367 ntBASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 AC009812.2-201ENST00000517657 457 ntBASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 AC113195.1-201ENST00000579952 141 ntBASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 AL669831.4-202ENST00000590817 238 ntBASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 AC004696.1-201ENST00000614345 607 ntBASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 AC027290.2-201ENST00000623210 18662 ntBASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms