Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AL139098.1-201ENST00000407291 389 ntBASIC1.21□□□□□ -2.22
USP54Q70EL1 AC096920.1-201ENST00000423991 241 ntBASIC1.21□□□□□ -2.22
USP54Q70EL1 AC007742.1-201ENST00000425789 329 ntBASIC1.21□□□□□ -2.22
USP54Q70EL1 AC093422.3-201ENST00000428506 305 ntBASIC1.21□□□□□ -2.22
USP54Q70EL1 MED14P1-201ENST00000430517 648 ntBASIC1.21□□□□□ -2.22
USP54Q70EL1 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC1.21□□□□□ -2.22
USP54Q70EL1 ELOCP26-201ENST00000436067 329 ntBASIC1.21□□□□□ -2.22
USP54Q70EL1 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC1.21□□□□□ -2.22
USP54Q70EL1 KLF3P2-201ENST00000465138 268 ntBASIC1.21□□□□□ -2.22
USP54Q70EL1 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
USP54Q70EL1 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
USP54Q70EL1 RNU6-1256P-201ENST00000516539 103 ntBASIC1.21□□□□□ -2.22
USP54Q70EL1 HSPA8P13-201ENST00000523715 472 ntBASIC1.21□□□□□ -2.22
USP54Q70EL1 CBX3P8-201ENST00000532412 525 ntBASIC1.21□□□□□ -2.22
USP54Q70EL1 CBX3P7-201ENST00000532876 502 ntBASIC1.21□□□□□ -2.22
USP54Q70EL1 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC1.21□□□□□ -2.22
USP54Q70EL1 AL160236.1-201ENST00000556317 195 ntBASIC1.21□□□□□ -2.22
USP54Q70EL1 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC1.21□□□□□ -2.22
USP54Q70EL1 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC1.21□□□□□ -2.22
USP54Q70EL1 DUXAP11-201ENST00000603858 526 ntBASIC1.21□□□□□ -2.22
USP54Q70EL1 AL121652.1-201ENST00000608851 448 ntBASIC1.21□□□□□ -2.22
USP54Q70EL1 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
USP54Q70EL1 MIR1264-201ENST00000616374 69 ntBASIC1.21□□□□□ -2.22
USP54Q70EL1 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC1.21□□□□□ -2.22
USP54Q70EL1 SNORD14B-201ENST00000364533 90 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 RNU6-140P-201ENST00000384566 108 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 MIR676-201ENST00000390702 67 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 SNORA40.19-201ENST00000390846 128 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 AL356131.1-201ENST00000405826 414 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 PSMA6P3-201ENST00000428242 164 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 AL590383.1-201ENST00000428602 75 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 RPL32P14-201ENST00000463196 378 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 AC091965.2-201ENST00000512324 613 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 RNU6-416P-201ENST00000516265 103 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC1.2□□□□□ -2.22
USP54Q70EL1 DEFB108E-201ENST00000524692 240 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 LINC00933-203ENST00000559812 219 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.2□□□□□ -2.22
USP54Q70EL1 AL022067.1-201ENST00000602426 454 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 AC096586.1-201ENST00000610267 561 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 DUXAP10-204ENST00000612052 616 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 AL138955.1-201ENST00000622881 1040 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.2□□□□□ -2.22
USP54Q70EL1 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
USP54Q70EL1 RNU6-1083P-201ENST00000384022 107 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC1.2□□□□□ -2.22
USP54Q70EL1 TMSB4XP8-201ENST00000402089 135 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 AL589655.1-201ENST00000405398 482 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 RNU6-955P-201ENST00000410497 104 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 TMSB4XP6-201ENST00000415187 135 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 TMSB4XP1-201ENST00000424567 135 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 AL512844.2-201ENST00000433990 593 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 AC241584.1-201ENST00000438469 1241 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 AC002542.1-201ENST00000440683 193 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 NEFMP1-201ENST00000443423 1006 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 MTND2P24-201ENST00000453434 806 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 AC005410.1-202ENST00000460347 485 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 RPS20P20-201ENST00000460498 340 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 LARP1BP2-201ENST00000486594 519 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
USP54Q70EL1 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
USP54Q70EL1 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC1.2□□□□□ -2.22
USP54Q70EL1 MIR4698-201ENST00000577795 80 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 uc_338.14-201ENST00000613162 166 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC1.2□□□□□ -2.22
USP54Q70EL1 AL512506.2-201ENST00000624472 458 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 AP003400.5-201ENST00000624827 617 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 LINC02211-204ENST00000642024 1070 ntBASIC1.2□□□□□ -2.22
USP54Q70EL1 AC007785.2-201ENST00000598627 1916 ntBASIC1.19□□□□□ -2.22
USP54Q70EL1 AC096649.2-201ENST00000416186 393 ntBASIC1.19□□□□□ -2.22
USP54Q70EL1 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC1.19□□□□□ -2.22
USP54Q70EL1 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC1.19□□□□□ -2.22
USP54Q70EL1 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC1.19□□□□□ -2.22
USP54Q70EL1 AC107032.1-201ENST00000485945 480 ntBASIC1.19□□□□□ -2.22
USP54Q70EL1 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.19□□□□□ -2.22
USP54Q70EL1 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC1.19□□□□□ -2.22
USP54Q70EL1 SCARNA15.2-201ENST00000516409 127 ntBASIC1.19□□□□□ -2.22
USP54Q70EL1 MIR892C-201ENST00000516410 77 ntBASIC1.19□□□□□ -2.22
USP54Q70EL1 SNORA31.22-201ENST00000517204 135 ntBASIC1.19□□□□□ -2.22
USP54Q70EL1 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC1.19□□□□□ -2.22
USP54Q70EL1 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC1.19□□□□□ -2.22
USP54Q70EL1 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.19□□□□□ -2.22
USP54Q70EL1 MTND5P30-201ENST00000452896 1731 ntBASIC1.19□□□□□ -2.22
USP54Q70EL1 RNU6-115P-201ENST00000364310 107 ntBASIC1.18□□□□□ -2.22
USP54Q70EL1 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
USP54Q70EL1 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
USP54Q70EL1 NDUFS5P1-201ENST00000405668 289 ntBASIC1.18□□□□□ -2.22
USP54Q70EL1 RPL21P90-201ENST00000415692 466 ntBASIC1.18□□□□□ -2.22
USP54Q70EL1 MTCO3P42-201ENST00000509488 518 ntBASIC1.18□□□□□ -2.22
USP54Q70EL1 MTCO3P39-201ENST00000514812 518 ntBASIC1.18□□□□□ -2.22
USP54Q70EL1 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC1.18□□□□□ -2.22
USP54Q70EL1 OR5AL2P-201ENST00000532185 920 ntBASIC1.18□□□□□ -2.22
USP54Q70EL1 BX322635.1-201ENST00000605804 496 ntBASIC1.18□□□□□ -2.22
USP54Q70EL1 U4atac.1-201ENST00000618345 95 ntBASIC1.18□□□□□ -2.22
USP54Q70EL1 MIR5739-201ENST00000619803 80 ntBASIC1.18□□□□□ -2.22
USP54Q70EL1 TEX21P-201ENST00000447107 1476 ntBASIC1.18□□□□□ -2.22
USP54Q70EL1 RNA5SP276-201ENST00000362580 94 ntBASIC1.17□□□□□ -2.22
USP54Q70EL1 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC1.17□□□□□ -2.22
USP54Q70EL1 VN1R36P-201ENST00000414936 291 ntBASIC1.17□□□□□ -2.22
USP54Q70EL1 BPY2DP-201ENST00000422208 265 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms