Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.96□□□□□ -1.78
USP39Q53GS9 HMGN2P31-201ENST00000432430 273 ntBASIC3.96□□□□□ -1.78
USP39Q53GS9 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.96□□□□□ -1.78
USP39Q53GS9 RNU7-167P-201ENST00000459160 62 ntBASIC3.96□□□□□ -1.78
USP39Q53GS9 RN7SL271P-201ENST00000487601 295 ntBASIC3.96□□□□□ -1.78
USP39Q53GS9 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.96□□□□□ -1.78
USP39Q53GS9 RNU6-475P-201ENST00000516073 104 ntBASIC3.96□□□□□ -1.78
USP39Q53GS9 SNORA70.14-201ENST00000516205 110 ntBASIC3.96□□□□□ -1.78
USP39Q53GS9 RNU6-1332P-201ENST00000516666 104 ntBASIC3.96□□□□□ -1.78
USP39Q53GS9 RNU1-54P-201ENST00000517181 120 ntBASIC3.96□□□□□ -1.78
USP39Q53GS9 IGKV2D-19-201ENST00000523346 262 ntBASIC3.96□□□□□ -1.78
USP39Q53GS9 OR5D17P-201ENST00000531492 978 ntBASIC3.96□□□□□ -1.78
USP39Q53GS9 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.96□□□□□ -1.78
USP39Q53GS9 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.96□□□□□ -1.78
USP39Q53GS9 AC011494.1-201ENST00000596454 237 ntBASIC3.96□□□□□ -1.78
USP39Q53GS9 AL355297.3-201ENST00000604082 446 ntBASIC3.96□□□□□ -1.78
USP39Q53GS9 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
USP39Q53GS9 U2.17-201ENST00000611454 95 ntBASIC3.96□□□□□ -1.78
USP39Q53GS9 AL021879.1-201ENST00000611756 288 ntBASIC3.96□□□□□ -1.78
USP39Q53GS9 MIR8062-201ENST00000621515 85 ntBASIC3.96□□□□□ -1.78
USP39Q53GS9 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.96□□□□□ -1.78
USP39Q53GS9 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
USP39Q53GS9 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.96□□□□□ -1.78
USP39Q53GS9 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.95□□□□□ -1.78
USP39Q53GS9 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
USP39Q53GS9 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
USP39Q53GS9 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
USP39Q53GS9 SNORD6-201ENST00000365444 73 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
USP39Q53GS9 RNU6-946P-201ENST00000383878 107 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 SNORA9-201ENST00000384215 133 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 MIR491-201ENST00000384877 84 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 RNU6-516P-201ENST00000411381 104 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.95□□□□□ -1.78
USP39Q53GS9 Z99755.1-201ENST00000414048 380 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 MRPS18CP6-201ENST00000423587 223 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 USMG5P1-201ENST00000425964 177 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 USP9YP30-201ENST00000430729 455 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 AC011742.1-201ENST00000431448 434 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.95□□□□□ -1.78
USP39Q53GS9 RPL21P2-201ENST00000440049 481 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.95□□□□□ -1.78
USP39Q53GS9 GAPDHP27-201ENST00000447427 1020 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 AC112492.4-201ENST00000456549 352 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 OARD1-209ENST00000471367 401 ntTSL 2 BASIC3.95□□□□□ -1.78
USP39Q53GS9 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC3.95□□□□□ -1.78
USP39Q53GS9 RNU2-69P-201ENST00000516061 100 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 RNU6-27P-201ENST00000516146 107 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 RNY3P15-201ENST00000516297 97 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 RN7SKP40-201ENST00000517211 242 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 IGKV2D-23-201ENST00000518179 286 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 DEFB108D-201ENST00000527787 222 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 RANP3-201ENST00000530970 276 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.95□□□□□ -1.78
USP39Q53GS9 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.95□□□□□ -1.78
USP39Q53GS9 AC087499.8-201ENST00000578406 226 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 AL160281.1-201ENST00000605307 311 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 U3.45-201ENST00000607547 219 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 MIR4727-201ENST00000622232 55 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 AL773545.4-201ENST00000637262 310 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 AL513478.4-201ENST00000641636 310 ntBASIC3.95□□□□□ -1.78
USP39Q53GS9 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.95□□□□□ -1.78
USP39Q53GS9 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.95□□□□□ -1.78
USP39Q53GS9 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
USP39Q53GS9 AC073346.2-201ENST00000624724 2058 ntBASIC3.94□□□□□ -1.78
USP39Q53GS9 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.94□□□□□ -1.78
USP39Q53GS9 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.94□□□□□ -1.78
USP39Q53GS9 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
USP39Q53GS9 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
USP39Q53GS9 RNU6-1284P-201ENST00000363701 100 ntBASIC3.94□□□□□ -1.78
USP39Q53GS9 RNU6-432P-201ENST00000384196 109 ntBASIC3.94□□□□□ -1.78
USP39Q53GS9 RNU6-754P-201ENST00000391166 107 ntBASIC3.94□□□□□ -1.78
USP39Q53GS9 AL109755.1-201ENST00000401791 649 ntBASIC3.94□□□□□ -1.78
USP39Q53GS9 HSPE1P26-201ENST00000405341 275 ntBASIC3.94□□□□□ -1.78
USP39Q53GS9 MIR1251-201ENST00000408552 70 ntBASIC3.94□□□□□ -1.78
USP39Q53GS9 RNU6-101P-201ENST00000410323 104 ntBASIC3.94□□□□□ -1.78
USP39Q53GS9 RNU2-23P-201ENST00000410545 195 ntBASIC3.94□□□□□ -1.78
USP39Q53GS9 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.94□□□□□ -1.78
USP39Q53GS9 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.94□□□□□ -1.78
USP39Q53GS9 AL035423.1-201ENST00000420331 213 ntBASIC3.94□□□□□ -1.78
USP39Q53GS9 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.94□□□□□ -1.78
USP39Q53GS9 AL591419.1-201ENST00000427423 339 ntBASIC3.94□□□□□ -1.78
USP39Q53GS9 HMGB1P9-201ENST00000429856 646 ntBASIC3.94□□□□□ -1.78
USP39Q53GS9 RPL23AP69-201ENST00000431134 458 ntBASIC3.94□□□□□ -1.78
USP39Q53GS9 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC3.94□□□□□ -1.78
USP39Q53GS9 RPS27AP1-201ENST00000475545 471 ntBASIC3.94□□□□□ -1.78
USP39Q53GS9 RPL31P61-201ENST00000496160 376 ntBASIC3.94□□□□□ -1.78
USP39Q53GS9 UBE2CP3-201ENST00000502715 450 ntBASIC3.94□□□□□ -1.78
USP39Q53GS9 RNU2-53P-201ENST00000516257 147 ntBASIC3.94□□□□□ -1.78
USP39Q53GS9 RNU6-352P-201ENST00000516908 107 ntBASIC3.94□□□□□ -1.78
USP39Q53GS9 AC131281.1-201ENST00000522984 164 ntBASIC3.94□□□□□ -1.78
USP39Q53GS9 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.94□□□□□ -1.78
USP39Q53GS9 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.94□□□□□ -1.78
USP39Q53GS9 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.94□□□□□ -1.78
USP39Q53GS9 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.94□□□□□ -1.78
USP39Q53GS9 ZNF192P1-203ENST00000565888 810 ntBASIC3.94□□□□□ -1.78
USP39Q53GS9 AC106782.4-201ENST00000568264 210 ntBASIC3.94□□□□□ -1.78
USP39Q53GS9 AC138627.2-201ENST00000624202 601 ntBASIC3.94□□□□□ -1.78
USP39Q53GS9 AL606534.2-204ENST00000635008 178 ntBASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms