Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AL030996.1-201ENST00000411430 235 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXA4Q00056 USMG5P1-201ENST00000425964 177 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 RPL7P2-201ENST00000427639 268 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 AL158071.1-201ENST00000430315 461 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 VDAC1P3-201ENST00000434069 851 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HOXA4Q00056 PCMTD1P1-201ENST00000455560 355 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 AL583843.1-201ENST00000456070 346 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 AC008571.1-201ENST00000467232 300 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 RN7SL323P-201ENST00000494712 295 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 AC022493.2-201ENST00000506122 481 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 AC113155.1-201ENST00000511141 769 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 RNA5SP165-201ENST00000517142 115 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 Y_RNA.720-201ENST00000517166 92 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.26□□□□□ -1.89
HOXA4Q00056 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.26□□□□□ -1.89
HOXA4Q00056 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.26□□□□□ -1.89
HOXA4Q00056 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXA4Q00056 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.26□□□□□ -1.89
HOXA4Q00056 AC244505.7-201ENST00000599675 272 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 AC007390.2-201ENST00000606229 3803 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 RNU6-6P-201ENST00000606623 107 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 AC112200.1-201ENST00000625015 234 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.26□□□□□ -1.89
HOXA4Q00056 MTND5P16-201ENST00000460269 1703 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXA4Q00056 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXA4Q00056 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HOXA4Q00056 AC006504.1-201ENST00000562493 3666 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXA4Q00056 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXA4Q00056 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HOXA4Q00056 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXA4Q00056 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXA4Q00056 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXA4Q00056 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXA4Q00056 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HOXA4Q00056 MIR412-201ENST00000362142 91 ntBASIC3.25□□□□□ -1.89
HOXA4Q00056 RNU6-490P-201ENST00000362985 107 ntBASIC3.25□□□□□ -1.89
HOXA4Q00056 Y_RNA.133-201ENST00000363428 110 ntBASIC3.25□□□□□ -1.89
HOXA4Q00056 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.25□□□□□ -1.89
HOXA4Q00056 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.25□□□□□ -1.89
HOXA4Q00056 RNU6-1032P-201ENST00000384100 107 ntBASIC3.25□□□□□ -1.89
HOXA4Q00056 RNY1P14-201ENST00000384426 108 ntBASIC3.25□□□□□ -1.89
HOXA4Q00056 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
HOXA4Q00056 RNU6-1106P-201ENST00000390845 107 ntBASIC3.25□□□□□ -1.89
HOXA4Q00056 MRPL42P3-201ENST00000401492 326 ntBASIC3.25□□□□□ -1.89
HOXA4Q00056 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXA4Q00056 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXA4Q00056 AL139247.1-201ENST00000422768 325 ntBASIC3.25□□□□□ -1.89
HOXA4Q00056 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC3.25□□□□□ -1.89
HOXA4Q00056 AC087650.1-201ENST00000431445 468 ntBASIC3.25□□□□□ -1.89
HOXA4Q00056 AL445584.1-201ENST00000431451 330 ntBASIC3.25□□□□□ -1.89
HOXA4Q00056 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXA4Q00056 SNORA71B-202ENST00000439232 272 ntBASIC3.25□□□□□ -1.89
HOXA4Q00056 AC009237.8-201ENST00000445492 379 ntBASIC3.25□□□□□ -1.89
HOXA4Q00056 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXA4Q00056 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC3.25□□□□□ -1.89
HOXA4Q00056 AC146944.2-203ENST00000502493 354 ntBASIC3.25□□□□□ -1.89
HOXA4Q00056 HMGN1P11-201ENST00000508668 303 ntBASIC3.25□□□□□ -1.89
HOXA4Q00056 AC005921.1-201ENST00000510589 286 ntBASIC3.25□□□□□ -1.89
HOXA4Q00056 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXA4Q00056 AC139495.1-202ENST00000513164 354 ntBASIC3.25□□□□□ -1.89
HOXA4Q00056 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXA4Q00056 TOMM20P2-201ENST00000540082 421 ntBASIC3.25□□□□□ -1.89
HOXA4Q00056 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXA4Q00056 AC087499.8-201ENST00000578406 226 ntBASIC3.25□□□□□ -1.89
HOXA4Q00056 MIR4680-201ENST00000580906 66 ntBASIC3.25□□□□□ -1.89
HOXA4Q00056 AL121917.1-203ENST00000605534 577 ntBASIC3.25□□□□□ -1.89
HOXA4Q00056 AC006157.1-201ENST00000611750 366 ntBASIC3.25□□□□□ -1.89
HOXA4Q00056 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.25□□□□□ -1.89
HOXA4Q00056 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC3.25□□□□□ -1.89
HOXA4Q00056 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXA4Q00056 AC008568.2-201ENST00000623862 2313 ntBASIC3.25□□□□□ -1.89
HOXA4Q00056 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC3.25□□□□□ -1.89
HOXA4Q00056 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXA4Q00056 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXA4Q00056 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXA4Q00056 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXA4Q00056 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXA4Q00056 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXA4Q00056 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXA4Q00056 RNU6-1105P-201ENST00000384774 107 ntBASIC3.24□□□□□ -1.89
HOXA4Q00056 MIR607-201ENST00000385241 96 ntBASIC3.24□□□□□ -1.89
HOXA4Q00056 MIR325-201ENST00000385260 98 ntBASIC3.24□□□□□ -1.89
HOXA4Q00056 SNORA57.1-201ENST00000391227 145 ntBASIC3.24□□□□□ -1.89
HOXA4Q00056 RNU6-325P-201ENST00000411132 105 ntBASIC3.24□□□□□ -1.89
HOXA4Q00056 AL096701.2-201ENST00000416920 238 ntBASIC3.24□□□□□ -1.89
HOXA4Q00056 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXA4Q00056 AC006946.1-201ENST00000429106 328 ntBASIC3.24□□□□□ -1.89
HOXA4Q00056 RPL23AP50-201ENST00000434149 455 ntBASIC3.24□□□□□ -1.89
HOXA4Q00056 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXA4Q00056 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXA4Q00056 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXA4Q00056 MTND5P22-201ENST00000458380 195 ntBASIC3.24□□□□□ -1.89
HOXA4Q00056 AL135752.1-201ENST00000479477 471 ntBASIC3.24□□□□□ -1.89
HOXA4Q00056 RPL31P13-201ENST00000484151 370 ntBASIC3.24□□□□□ -1.89
HOXA4Q00056 SNORA25.10-201ENST00000515926 124 ntBASIC3.24□□□□□ -1.89
HOXA4Q00056 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms