Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.41□□□□□ -2.34
PRKDCP78527 AC090132.2-201ENST00000615881 347 ntBASIC0.41□□□□□ -2.34
PRKDCP78527 RNU6-420P-201ENST00000458780 107 ntBASIC0.4□□□□□ -2.34
PRKDCP78527 HMGN2P9-201ENST00000476875 229 ntBASIC0.4□□□□□ -2.34
PRKDCP78527 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC0.4□□□□□ -2.34
PRKDCP78527 AL133370.2-201ENST00000619934 439 ntBASIC0.4□□□□□ -2.34
PRKDCP78527 AGR3-202ENST00000402239 563 ntTSL 2 BASIC0.4□□□□□ -2.35
PRKDCP78527 ARPC3P5-201ENST00000448802 534 ntBASIC0.4□□□□□ -2.35
PRKDCP78527 AC109927.2-201ENST00000506416 303 ntBASIC0.4□□□□□ -2.35
PRKDCP78527 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC0.4□□□□□ -2.35
PRKDCP78527 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC0.4□□□□□ -2.35
PRKDCP78527 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.4□□□□□ -2.35
PRKDCP78527 AC136932.1-201ENST00000574771 208 ntBASIC0.4□□□□□ -2.35
PRKDCP78527 MIR4765-201ENST00000585007 77 ntBASIC0.4□□□□□ -2.35
PRKDCP78527 AL139344.1-201ENST00000605228 195 ntBASIC0.4□□□□□ -2.35
PRKDCP78527 MIR5739-201ENST00000619803 80 ntBASIC0.4□□□□□ -2.35
PRKDCP78527 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC0.4□□□□□ -2.35
PRKDCP78527 RNU5D-1-201ENST00000363299 116 ntBASIC0.4□□□□□ -2.35
PRKDCP78527 SNORA16B-201ENST00000364674 135 ntBASIC0.4□□□□□ -2.35
PRKDCP78527 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC0.4□□□□□ -2.35
PRKDCP78527 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC0.4□□□□□ -2.35
PRKDCP78527 TRAPPC2P3-201ENST00000443200 321 ntBASIC0.4□□□□□ -2.35
PRKDCP78527 OR52A4P-202ENST00000481634 799 ntBASIC0.4□□□□□ -2.35
PRKDCP78527 EIF4EP3-201ENST00000498782 656 ntBASIC0.4□□□□□ -2.35
PRKDCP78527 AGGF1P5-201ENST00000567900 919 ntBASIC0.4□□□□□ -2.35
PRKDCP78527 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC0.4□□□□□ -2.35
PRKDCP78527 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC0.4□□□□□ -2.35
PRKDCP78527 AL360181.4-201ENST00000621752 134 ntBASIC0.4□□□□□ -2.35
PRKDCP78527 AC083865.1-201ENST00000636634 831 ntBASIC0.4□□□□□ -2.35
PRKDCP78527 MIR126-201ENST00000362291 85 ntBASIC0.4□□□□□ -2.35
PRKDCP78527 RNU6-989P-201ENST00000362756 107 ntBASIC0.4□□□□□ -2.35
PRKDCP78527 SNORD33-201ENST00000362761 85 ntBASIC0.4□□□□□ -2.35
PRKDCP78527 RNA5SP125-201ENST00000364843 120 ntBASIC0.4□□□□□ -2.35
PRKDCP78527 RNU2-63P-201ENST00000410792 194 ntBASIC0.4□□□□□ -2.35
PRKDCP78527 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC0.4□□□□□ -2.35
PRKDCP78527 AC073614.1-201ENST00000438690 650 ntBASIC0.4□□□□□ -2.35
PRKDCP78527 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC0.4□□□□□ -2.35
PRKDCP78527 HMGB1P22-201ENST00000505315 124 ntBASIC0.4□□□□□ -2.35
PRKDCP78527 AL450336.1-201ENST00000605180 586 ntBASIC0.4□□□□□ -2.35
PRKDCP78527 AC012676.2-201ENST00000619258 186 ntBASIC0.4□□□□□ -2.35
PRKDCP78527 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC0.39□□□□□ -2.35
PRKDCP78527 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC0.39□□□□□ -2.35
PRKDCP78527 TRBV25OR9-2-201ENST00000438417 374 ntBASIC0.39□□□□□ -2.35
PRKDCP78527 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC0.39□□□□□ -2.35
PRKDCP78527 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC0.39□□□□□ -2.35
PRKDCP78527 POLR2KP1-201ENST00000553226 168 ntBASIC0.39□□□□□ -2.35
PRKDCP78527 AC040174.2-201ENST00000602701 465 ntBASIC0.39□□□□□ -2.35
PRKDCP78527 AL590410.1-201ENST00000617925 333 ntBASIC0.39□□□□□ -2.35
PRKDCP78527 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC0.39□□□□□ -2.35
PRKDCP78527 RNU6-1249P-201ENST00000363237 111 ntBASIC0.39□□□□□ -2.35
PRKDCP78527 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC0.39□□□□□ -2.35
PRKDCP78527 AC241584.1-201ENST00000438469 1241 ntBASIC0.39□□□□□ -2.35
PRKDCP78527 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC0.39□□□□□ -2.35
PRKDCP78527 RPL9P9-202ENST00000466501 579 ntBASIC0.39□□□□□ -2.35
PRKDCP78527 AC091435.1-201ENST00000505442 584 ntBASIC0.39□□□□□ -2.35
PRKDCP78527 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC0.39□□□□□ -2.35
PRKDCP78527 MIR4661-201ENST00000582720 75 ntBASIC0.39□□□□□ -2.35
PRKDCP78527 AL592148.2-201ENST00000612210 372 ntBASIC0.39□□□□□ -2.35
PRKDCP78527 DBF4P1-201ENST00000412976 1892 ntBASIC0.39□□□□□ -2.35
PRKDCP78527 Y_RNA.170-201ENST00000363746 110 ntBASIC0.39□□□□□ -2.35
PRKDCP78527 VN1R42P-201ENST00000424651 344 ntBASIC0.39□□□□□ -2.35
PRKDCP78527 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC0.39□□□□□ -2.35
PRKDCP78527 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC0.39□□□□□ -2.35
PRKDCP78527 BOLA3P3-201ENST00000505182 232 ntBASIC0.39□□□□□ -2.35
PRKDCP78527 AP003355.1-201ENST00000518956 587 ntBASIC0.39□□□□□ -2.35
PRKDCP78527 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC0.39□□□□□ -2.35
PRKDCP78527 ZNF29P-201ENST00000225587 168 ntBASIC0.38□□□□□ -2.35
PRKDCP78527 RNU5E-1-201ENST00000362477 120 ntBASIC0.38□□□□□ -2.35
PRKDCP78527 MIR30A-201ENST00000385092 71 ntBASIC0.38□□□□□ -2.35
PRKDCP78527 AP002784.2-201ENST00000397300 549 ntBASIC0.38□□□□□ -2.35
PRKDCP78527 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC0.38□□□□□ -2.35
PRKDCP78527 HSPE1P21-201ENST00000438283 308 ntBASIC0.38□□□□□ -2.35
PRKDCP78527 PTENP1-201ENST00000447117 1215 ntBASIC0.38□□□□□ -2.35
PRKDCP78527 AL034418.1-201ENST00000448675 860 ntBASIC0.38□□□□□ -2.35
PRKDCP78527 ANKRD26P4-201ENST00000455755 950 ntBASIC0.38□□□□□ -2.35
PRKDCP78527 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC0.38□□□□□ -2.35
PRKDCP78527 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC0.38□□□□□ -2.35
PRKDCP78527 AC023050.2-201ENST00000544968 387 ntBASIC0.38□□□□□ -2.35
PRKDCP78527 AL078605.1-201ENST00000603529 500 ntBASIC0.38□□□□□ -2.35
PRKDCP78527 MTRNR2L2-201ENST00000604882 87 ntBASIC0.38□□□□□ -2.35
PRKDCP78527 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.38□□□□□ -2.35
PRKDCP78527 RNU6-1035P-201ENST00000384477 107 ntBASIC0.38□□□□□ -2.35
PRKDCP78527 RN7SKP61-201ENST00000410642 295 ntBASIC0.38□□□□□ -2.35
PRKDCP78527 TRIM60P3Y-201ENST00000432201 673 ntBASIC0.38□□□□□ -2.35
PRKDCP78527 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC0.38□□□□□ -2.35
PRKDCP78527 LY96-202ENST00000518893 430 ntTSL 3 BASIC0.38□□□□□ -2.35
PRKDCP78527 AC090666.1-201ENST00000578241 445 ntBASIC0.38□□□□□ -2.35
PRKDCP78527 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.38□□□□□ -2.35
PRKDCP78527 AC003001.2-201ENST00000616294 831 ntBASIC0.38□□□□□ -2.35
PRKDCP78527 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC0.38□□□□□ -2.35
PRKDCP78527 RNU4-67P-201ENST00000364569 141 ntBASIC0.38□□□□□ -2.35
PRKDCP78527 RNA5SP63-201ENST00000391225 112 ntBASIC0.38□□□□□ -2.35
PRKDCP78527 BTF3L4P2-201ENST00000392798 346 ntBASIC0.38□□□□□ -2.35
PRKDCP78527 RPL30P13-201ENST00000418873 348 ntBASIC0.38□□□□□ -2.35
PRKDCP78527 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC0.38□□□□□ -2.35
PRKDCP78527 MTCO1P53-201ENST00000441633 699 ntBASIC0.38□□□□□ -2.35
PRKDCP78527 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC0.38□□□□□ -2.35
PRKDCP78527 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC0.38□□□□□ -2.35
PRKDCP78527 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC0.38□□□□□ -2.35
PRKDCP78527 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 144.4 ms