Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 Y_RNA.682-201ENST00000516457 100 ntBASIC3.3□□□□□ -1.88
RAE1P78406 SNORA70.19-201ENST00000516717 90 ntBASIC3.3□□□□□ -1.88
RAE1P78406 RNU6-566P-201ENST00000516790 107 ntBASIC3.3□□□□□ -1.88
RAE1P78406 RNA5SP165-201ENST00000517142 115 ntBASIC3.3□□□□□ -1.88
RAE1P78406 RNA5SP454-201ENST00000517231 127 ntBASIC3.3□□□□□ -1.88
RAE1P78406 AC087854.1-201ENST00000519706 414 ntBASIC3.3□□□□□ -1.88
RAE1P78406 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.3□□□□□ -1.88
RAE1P78406 COPS8P3-201ENST00000526024 482 ntBASIC3.3□□□□□ -1.88
RAE1P78406 AC011602.1-201ENST00000546484 331 ntBASIC3.3□□□□□ -1.88
RAE1P78406 TRAV37-201ENST00000553906 342 ntBASIC3.3□□□□□ -1.88
RAE1P78406 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.3□□□□□ -1.88
RAE1P78406 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.3□□□□□ -1.88
RAE1P78406 AC007938.3-201ENST00000604965 623 ntBASIC3.3□□□□□ -1.88
RAE1P78406 AC004805.2-201ENST00000605382 482 ntBASIC3.3□□□□□ -1.88
RAE1P78406 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.3□□□□□ -1.88
RAE1P78406 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.3□□□□□ -1.88
RAE1P78406 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.3□□□□□ -1.88
RAE1P78406 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.3□□□□□ -1.88
RAE1P78406 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
RAE1P78406 AC002546.1-201ENST00000588041 2504 ntBASIC3.3□□□□□ -1.88
RAE1P78406 ZNF807-201ENST00000328088 1707 ntBASIC3.3□□□□□ -1.88
RAE1P78406 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.3□□□□□ -1.88
RAE1P78406 ZNF519P1-201ENST00000449011 1626 ntBASIC3.3□□□□□ -1.88
RAE1P78406 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.29□□□□□ -1.88
RAE1P78406 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
RAE1P78406 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
RAE1P78406 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.29□□□□□ -1.88
RAE1P78406 AC006026.1-201ENST00000444025 1803 ntBASIC3.29□□□□□ -1.88
RAE1P78406 SNORD3E-201ENST00000362899 217 ntBASIC3.29□□□□□ -1.88
RAE1P78406 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
RAE1P78406 SNORA5A-201ENST00000384111 134 ntBASIC3.29□□□□□ -1.88
RAE1P78406 MIR548F5-201ENST00000408421 86 ntBASIC3.29□□□□□ -1.88
RAE1P78406 RNU6-55P-201ENST00000411092 107 ntBASIC3.29□□□□□ -1.88
RAE1P78406 RNU6-954P-201ENST00000411355 107 ntBASIC3.29□□□□□ -1.88
RAE1P78406 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.29□□□□□ -1.88
RAE1P78406 RPL32P28-201ENST00000443577 397 ntBASIC3.29□□□□□ -1.88
RAE1P78406 NDUFB1P2-201ENST00000449477 176 ntBASIC3.29□□□□□ -1.88
RAE1P78406 AC107399.1-201ENST00000451226 265 ntBASIC3.29□□□□□ -1.88
RAE1P78406 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC3.29□□□□□ -1.88
RAE1P78406 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.29□□□□□ -1.88
RAE1P78406 Y_RNA.635-201ENST00000459041 101 ntBASIC3.29□□□□□ -1.88
RAE1P78406 RNU7-138P-201ENST00000459479 64 ntBASIC3.29□□□□□ -1.88
RAE1P78406 MTND4P17-201ENST00000470444 350 ntBASIC3.29□□□□□ -1.88
RAE1P78406 AC008526.1-201ENST00000509149 338 ntBASIC3.29□□□□□ -1.88
RAE1P78406 RN7SKP18-201ENST00000516005 275 ntBASIC3.29□□□□□ -1.88
RAE1P78406 RNU1-86P-201ENST00000516108 154 ntBASIC3.29□□□□□ -1.88
RAE1P78406 RNU1-107P-201ENST00000516617 154 ntBASIC3.29□□□□□ -1.88
RAE1P78406 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.29□□□□□ -1.88
RAE1P78406 RNU6-323P-201ENST00000521915 107 ntBASIC3.29□□□□□ -1.88
RAE1P78406 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.29□□□□□ -1.88
RAE1P78406 MIR4790-201ENST00000577799 79 ntBASIC3.29□□□□□ -1.88
RAE1P78406 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
RAE1P78406 AC099506.2-201ENST00000623074 221 ntBASIC3.29□□□□□ -1.88
RAE1P78406 AC027309.3-201ENST00000623419 351 ntBASIC3.29□□□□□ -1.88
RAE1P78406 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.29□□□□□ -1.88
RAE1P78406 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
RAE1P78406 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
RAE1P78406 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.29□□□□□ -1.88
RAE1P78406 AC032011.1-201ENST00000611703 1549 ntBASIC3.29□□□□□ -1.88
RAE1P78406 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.29□□□□□ -1.88
RAE1P78406 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
RAE1P78406 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
RAE1P78406 Y_RNA.384-201ENST00000383909 102 ntBASIC3.28□□□□□ -1.88
RAE1P78406 Y_RNA.387-201ENST00000383918 102 ntBASIC3.28□□□□□ -1.88
RAE1P78406 Y_RNA.460-201ENST00000384255 102 ntBASIC3.28□□□□□ -1.88
RAE1P78406 RNU6-140P-201ENST00000384566 108 ntBASIC3.28□□□□□ -1.88
RAE1P78406 SNORA40C-201ENST00000391285 128 ntBASIC3.28□□□□□ -1.88
RAE1P78406 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
RAE1P78406 RN7SKP158-201ENST00000410453 326 ntBASIC3.28□□□□□ -1.88
RAE1P78406 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.28□□□□□ -1.88
RAE1P78406 TMEM167AP1-201ENST00000423409 219 ntBASIC3.28□□□□□ -1.88
RAE1P78406 MTND1P14-201ENST00000427400 950 ntBASIC3.28□□□□□ -1.88
RAE1P78406 SNAP23P1-201ENST00000433229 246 ntBASIC3.28□□□□□ -1.88
RAE1P78406 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.28□□□□□ -1.88
RAE1P78406 AL359672.1-201ENST00000442302 409 ntBASIC3.28□□□□□ -1.88
RAE1P78406 AC010401.1-201ENST00000463867 348 ntBASIC3.28□□□□□ -1.88
RAE1P78406 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.28□□□□□ -1.88
RAE1P78406 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.28□□□□□ -1.88
RAE1P78406 MTND5P5-201ENST00000503764 376 ntBASIC3.28□□□□□ -1.88
RAE1P78406 RPL39P5-202ENST00000512505 151 ntBASIC3.28□□□□□ -1.88
RAE1P78406 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC3.28□□□□□ -1.88
RAE1P78406 AP005639.2-201ENST00000527592 928 ntBASIC3.28□□□□□ -1.88
RAE1P78406 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.28□□□□□ -1.88
RAE1P78406 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.28□□□□□ -1.88
RAE1P78406 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.28□□□□□ -1.88
RAE1P78406 AC138761.3-201ENST00000579993 334 ntBASIC3.28□□□□□ -1.88
RAE1P78406 POLR3GP2-201ENST00000588366 668 ntBASIC3.28□□□□□ -1.88
RAE1P78406 AL670379.10-201ENST00000604330 253 ntBASIC3.28□□□□□ -1.88
RAE1P78406 AL670379.9-201ENST00000605428 253 ntBASIC3.28□□□□□ -1.88
RAE1P78406 MIR6798-201ENST00000612887 67 ntBASIC3.28□□□□□ -1.88
RAE1P78406 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
RAE1P78406 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.28□□□□□ -1.88
RAE1P78406 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
RAE1P78406 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.28□□□□□ -1.88
RAE1P78406 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.28□□□□□ -1.88
RAE1P78406 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC3.28□□□□□ -1.88
RAE1P78406 AL356274.2-201ENST00000624379 3752 ntBASIC3.28□□□□□ -1.88
RAE1P78406 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
RAE1P78406 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
RAE1P78406 CUL1P1-201ENST00000509510 2425 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 164.9 ms