Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC098614.2-201ENST00000426040 255 ntBASIC4.51□□□□□ -1.69
LIG3P49916 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.51□□□□□ -1.69
LIG3P49916 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC4.51□□□□□ -1.69
LIG3P49916 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.51□□□□□ -1.69
LIG3P49916 RPS3AP46-201ENST00000448352 682 ntBASIC4.51□□□□□ -1.69
LIG3P49916 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC4.51□□□□□ -1.69
LIG3P49916 MTCO3P8-201ENST00000453691 755 ntBASIC4.51□□□□□ -1.69
LIG3P49916 AC092798.1-201ENST00000458542 409 ntBASIC4.51□□□□□ -1.69
LIG3P49916 AC025554.1-201ENST00000505641 188 ntBASIC4.51□□□□□ -1.69
LIG3P49916 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC4.51□□□□□ -1.69
LIG3P49916 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC4.51□□□□□ -1.69
LIG3P49916 IGLVIV-65-201ENST00000517313 360 ntBASIC4.51□□□□□ -1.69
LIG3P49916 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC4.51□□□□□ -1.69
LIG3P49916 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.51□□□□□ -1.69
LIG3P49916 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.51□□□□□ -1.69
LIG3P49916 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
LIG3P49916 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
LIG3P49916 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.51□□□□□ -1.69
LIG3P49916 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC4.51□□□□□ -1.69
LIG3P49916 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.51□□□□□ -1.69
LIG3P49916 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
LIG3P49916 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC4.5□□□□□ -1.69
LIG3P49916 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
LIG3P49916 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.5□□□□□ -1.69
LIG3P49916 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
LIG3P49916 MARK2P15-201ENST00000432204 2186 ntBASIC4.5□□□□□ -1.69
LIG3P49916 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.5□□□□□ -1.69
LIG3P49916 RNA5SP322-201ENST00000363617 119 ntBASIC4.5□□□□□ -1.69
LIG3P49916 RNY3P11-201ENST00000364153 102 ntBASIC4.5□□□□□ -1.69
LIG3P49916 RNU1-89P-201ENST00000384592 164 ntBASIC4.5□□□□□ -1.69
LIG3P49916 MIR607-201ENST00000385241 96 ntBASIC4.5□□□□□ -1.69
LIG3P49916 RNU6-700P-201ENST00000391043 107 ntBASIC4.5□□□□□ -1.69
LIG3P49916 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.5□□□□□ -1.69
LIG3P49916 AC092423.1-201ENST00000430165 186 ntBASIC4.5□□□□□ -1.69
LIG3P49916 AL159987.2-201ENST00000432754 307 ntBASIC4.5□□□□□ -1.69
LIG3P49916 AC073910.1-201ENST00000445047 438 ntBASIC4.5□□□□□ -1.69
LIG3P49916 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
LIG3P49916 AC012671.1-201ENST00000451912 203 ntBASIC4.5□□□□□ -1.69
LIG3P49916 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
LIG3P49916 Y_RNA.668-201ENST00000516233 93 ntBASIC4.5□□□□□ -1.69
LIG3P49916 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.5□□□□□ -1.69
LIG3P49916 MIR5696-201ENST00000578474 85 ntBASIC4.5□□□□□ -1.69
LIG3P49916 AC136601.2-201ENST00000604356 474 ntBASIC4.5□□□□□ -1.69
LIG3P49916 AC006023.2-201ENST00000609916 167 ntBASIC4.5□□□□□ -1.69
LIG3P49916 UBE2Q2P6-201ENST00000612666 153 ntBASIC4.5□□□□□ -1.69
LIG3P49916 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC4.5□□□□□ -1.69
LIG3P49916 MIR1244-1-201ENST00000612829 85 ntBASIC4.5□□□□□ -1.69
LIG3P49916 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.5□□□□□ -1.69
LIG3P49916 AC027309.3-201ENST00000623419 351 ntBASIC4.5□□□□□ -1.69
LIG3P49916 MIR1244-3-201ENST00000635744 85 ntBASIC4.5□□□□□ -1.69
LIG3P49916 MIR1244-2-201ENST00000636449 85 ntBASIC4.5□□□□□ -1.69
LIG3P49916 MIR1244-4-202ENST00000636813 85 ntBASIC4.5□□□□□ -1.69
LIG3P49916 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
LIG3P49916 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.49□□□□□ -1.69
LIG3P49916 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LIG3P49916 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.49□□□□□ -1.69
LIG3P49916 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LIG3P49916 SAR1AP2-201ENST00000392696 594 ntBASIC4.49□□□□□ -1.69
LIG3P49916 TMSB10P2-201ENST00000416049 131 ntBASIC4.49□□□□□ -1.69
LIG3P49916 C4BPAP2-201ENST00000428434 478 ntBASIC4.49□□□□□ -1.69
LIG3P49916 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LIG3P49916 RPL23AP25-201ENST00000430973 463 ntBASIC4.49□□□□□ -1.69
LIG3P49916 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.49□□□□□ -1.69
LIG3P49916 SNRPEP9-201ENST00000436794 238 ntBASIC4.49□□□□□ -1.69
LIG3P49916 RPS3AP12-201ENST00000443616 753 ntBASIC4.49□□□□□ -1.69
LIG3P49916 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.49□□□□□ -1.69
LIG3P49916 AC013470.1-201ENST00000453438 462 ntBASIC4.49□□□□□ -1.69
LIG3P49916 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC4.49□□□□□ -1.69
LIG3P49916 RNU7-169P-201ENST00000459456 61 ntBASIC4.49□□□□□ -1.69
LIG3P49916 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.49□□□□□ -1.69
LIG3P49916 RN7SL283P-201ENST00000489055 303 ntBASIC4.49□□□□□ -1.69
LIG3P49916 RNU6-612P-201ENST00000516909 102 ntBASIC4.49□□□□□ -1.69
LIG3P49916 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LIG3P49916 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.49□□□□□ -1.69
LIG3P49916 MIR5701-3-201ENST00000578890 82 ntBASIC4.49□□□□□ -1.69
LIG3P49916 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC4.49□□□□□ -1.69
LIG3P49916 MIR5701-1-201ENST00000585138 82 ntBASIC4.49□□□□□ -1.69
LIG3P49916 BPIFA4P-203ENST00000603168 689 ntBASIC4.49□□□□□ -1.69
LIG3P49916 MIR432-201ENST00000606207 94 ntBASIC4.49□□□□□ -1.69
LIG3P49916 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC4.49□□□□□ -1.69
LIG3P49916 MIR5701-2-201ENST00000615634 82 ntBASIC4.49□□□□□ -1.69
LIG3P49916 MIR6758-201ENST00000620653 63 ntBASIC4.49□□□□□ -1.69
LIG3P49916 MIR6810-201ENST00000622701 70 ntBASIC4.49□□□□□ -1.69
LIG3P49916 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC4.49□□□□□ -1.69
LIG3P49916 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
LIG3P49916 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
LIG3P49916 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
LIG3P49916 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC4.49□□□□□ -1.69
LIG3P49916 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.49□□□□□ -1.69
LIG3P49916 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LIG3P49916 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.49□□□□□ -1.69
LIG3P49916 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
LIG3P49916 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.69
LIG3P49916 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
LIG3P49916 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.48□□□□□ -1.69
LIG3P49916 RNU6-595P-201ENST00000363944 107 ntBASIC4.48□□□□□ -1.69
LIG3P49916 RNU5E-7P-201ENST00000365290 117 ntBASIC4.48□□□□□ -1.69
LIG3P49916 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
LIG3P49916 RNU1-63P-201ENST00000383902 164 ntBASIC4.48□□□□□ -1.69
LIG3P49916 Y_RNA.512-201ENST00000384518 102 ntBASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 125.7 ms