Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RNU4-91P-201ENST00000364778 135 ntBASIC2.47□□□□□ -2.01
SDC3O75056 SMIM11P1-201ENST00000369586 178 ntBASIC2.47□□□□□ -2.01
SDC3O75056 SNORD116-8-201ENST00000384365 95 ntBASIC2.47□□□□□ -2.01
SDC3O75056 RNU4-53P-201ENST00000410828 140 ntBASIC2.47□□□□□ -2.01
SDC3O75056 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC2.47□□□□□ -2.01
SDC3O75056 RPL26P27-201ENST00000414397 437 ntBASIC2.47□□□□□ -2.01
SDC3O75056 AC096649.2-201ENST00000416186 393 ntBASIC2.47□□□□□ -2.01
SDC3O75056 Z98742.3-201ENST00000418637 326 ntBASIC2.47□□□□□ -2.01
SDC3O75056 HMGB1P9-201ENST00000429856 646 ntBASIC2.47□□□□□ -2.01
SDC3O75056 RPL36AP53-201ENST00000432891 316 ntBASIC2.47□□□□□ -2.01
SDC3O75056 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.47□□□□□ -2.01
SDC3O75056 USP9YP15-201ENST00000442391 422 ntBASIC2.47□□□□□ -2.01
SDC3O75056 OSTCP8-201ENST00000445117 448 ntBASIC2.47□□□□□ -2.01
SDC3O75056 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC2.47□□□□□ -2.01
SDC3O75056 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.47□□□□□ -2.01
SDC3O75056 RNU6-953P-201ENST00000459154 107 ntBASIC2.47□□□□□ -2.01
SDC3O75056 MTND3P7-201ENST00000474435 343 ntBASIC2.47□□□□□ -2.01
SDC3O75056 RPL39P36-201ENST00000490784 156 ntBASIC2.47□□□□□ -2.01
SDC3O75056 AC026801.1-201ENST00000497178 464 ntBASIC2.47□□□□□ -2.01
SDC3O75056 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.47□□□□□ -2.01
SDC3O75056 AC010587.1-201ENST00000505809 469 ntBASIC2.47□□□□□ -2.01
SDC3O75056 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC2.47□□□□□ -2.01
SDC3O75056 AC098591.2-201ENST00000510152 315 ntBASIC2.47□□□□□ -2.01
SDC3O75056 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC2.47□□□□□ -2.01
SDC3O75056 Y_RNA.672-201ENST00000516289 104 ntBASIC2.47□□□□□ -2.01
SDC3O75056 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.47□□□□□ -2.01
SDC3O75056 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC2.47□□□□□ -2.01
SDC3O75056 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.47□□□□□ -2.01
SDC3O75056 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC2.47□□□□□ -2.01
SDC3O75056 AC007834.2-201ENST00000536310 343 ntBASIC2.47□□□□□ -2.01
SDC3O75056 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC2.47□□□□□ -2.01
SDC3O75056 AC091304.9-201ENST00000612091 226 ntBASIC2.47□□□□□ -2.01
SDC3O75056 AC108479.2-201ENST00000617314 601 ntBASIC2.47□□□□□ -2.01
SDC3O75056 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2.47□□□□□ -2.01
SDC3O75056 AL603839.4-201ENST00000624658 1005 ntBASIC2.47□□□□□ -2.01
SDC3O75056 AC025048.6-202ENST00000627667 438 ntBASIC2.47□□□□□ -2.01
SDC3O75056 AC004520.1-201ENST00000608362 1413 ntBASIC2.47□□□□□ -2.01
SDC3O75056 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
SDC3O75056 AC010889.1-201ENST00000566193 2666 ntBASIC2.47□□□□□ -2.01
SDC3O75056 AC135776.4-201ENST00000624300 1904 ntBASIC2.46□□□□□ -2.02
SDC3O75056 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.46□□□□□ -2.02
SDC3O75056 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
SDC3O75056 RNA5SP393-201ENST00000363423 117 ntBASIC2.46□□□□□ -2.02
SDC3O75056 SNORA26.8-201ENST00000391306 124 ntBASIC2.46□□□□□ -2.02
SDC3O75056 RPL23AP32-201ENST00000395315 459 ntBASIC2.46□□□□□ -2.02
SDC3O75056 AF228730.1-201ENST00000397972 663 ntBASIC2.46□□□□□ -2.02
SDC3O75056 RNU2-8P-201ENST00000410727 190 ntBASIC2.46□□□□□ -2.02
SDC3O75056 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC2.46□□□□□ -2.02
SDC3O75056 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.46□□□□□ -2.02
SDC3O75056 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.46□□□□□ -2.02
SDC3O75056 SKA2P1-201ENST00000425592 390 ntBASIC2.46□□□□□ -2.02
SDC3O75056 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.46□□□□□ -2.02
SDC3O75056 AL589872.1-201ENST00000426602 288 ntBASIC2.46□□□□□ -2.02
SDC3O75056 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.46□□□□□ -2.02
SDC3O75056 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC2.46□□□□□ -2.02
SDC3O75056 AC098831.1-201ENST00000440661 216 ntBASIC2.46□□□□□ -2.02
SDC3O75056 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.46□□□□□ -2.02
SDC3O75056 MTND6P13-201ENST00000443510 523 ntBASIC2.46□□□□□ -2.02
SDC3O75056 HIGD1AP2-201ENST00000446367 280 ntBASIC2.46□□□□□ -2.02
SDC3O75056 AC107626.1-201ENST00000471084 183 ntBASIC2.46□□□□□ -2.02
SDC3O75056 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.46□□□□□ -2.02
SDC3O75056 RN7SL636P-201ENST00000497504 294 ntBASIC2.46□□□□□ -2.02
SDC3O75056 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.46□□□□□ -2.02
SDC3O75056 AC022447.1-201ENST00000515358 464 ntBASIC2.46□□□□□ -2.02
SDC3O75056 SCARNA11.3-201ENST00000517276 130 ntBASIC2.46□□□□□ -2.02
SDC3O75056 HMGB1P41-201ENST00000520234 440 ntBASIC2.46□□□□□ -2.02
SDC3O75056 OSBPL9P5-201ENST00000542581 171 ntBASIC2.46□□□□□ -2.02
SDC3O75056 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.46□□□□□ -2.02
SDC3O75056 MTND3P12-201ENST00000559068 328 ntBASIC2.46□□□□□ -2.02
SDC3O75056 AC007151.1-201ENST00000572774 483 ntBASIC2.46□□□□□ -2.02
SDC3O75056 AC024619.4-201ENST00000580924 316 ntBASIC2.46□□□□□ -2.02
SDC3O75056 MIR548AB-201ENST00000584917 84 ntBASIC2.46□□□□□ -2.02
SDC3O75056 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC2.46□□□□□ -2.02
SDC3O75056 BNIP3P8-201ENST00000597863 560 ntBASIC2.46□□□□□ -2.02
SDC3O75056 AL356280.1-201ENST00000603614 379 ntBASIC2.46□□□□□ -2.02
SDC3O75056 AC007938.3-201ENST00000604965 623 ntBASIC2.46□□□□□ -2.02
SDC3O75056 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.46□□□□□ -2.02
SDC3O75056 AC091931.1-201ENST00000623488 728 ntBASIC2.46□□□□□ -2.02
SDC3O75056 MTND5P42-201ENST00000637720 498 ntBASIC2.46□□□□□ -2.02
SDC3O75056 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
SDC3O75056 Z82195.2-201ENST00000612348 18351 ntBASIC2.46□□□□□ -2.02
SDC3O75056 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
SDC3O75056 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
SDC3O75056 RNU5E-1-201ENST00000362477 120 ntBASIC2.45□□□□□ -2.02
SDC3O75056 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC2.45□□□□□ -2.02
SDC3O75056 AC119618.1-201ENST00000434191 222 ntBASIC2.45□□□□□ -2.02
SDC3O75056 MRPL50P4-201ENST00000446432 475 ntBASIC2.45□□□□□ -2.02
SDC3O75056 AC009961.3-201ENST00000449832 765 ntBASIC2.45□□□□□ -2.02
SDC3O75056 RNA5SP269-201ENST00000459032 137 ntBASIC2.45□□□□□ -2.02
SDC3O75056 RPL23AP45-201ENST00000476406 468 ntBASIC2.45□□□□□ -2.02
SDC3O75056 AC103975.1-201ENST00000482506 483 ntBASIC2.45□□□□□ -2.02
SDC3O75056 MTND1P3-201ENST00000484956 952 ntBASIC2.45□□□□□ -2.02
SDC3O75056 RNU5F-8P-201ENST00000515941 111 ntBASIC2.45□□□□□ -2.02
SDC3O75056 RNU7-51P-201ENST00000516560 62 ntBASIC2.45□□□□□ -2.02
SDC3O75056 RNU6-703P-201ENST00000516946 107 ntBASIC2.45□□□□□ -2.02
SDC3O75056 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC2.45□□□□□ -2.02
SDC3O75056 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.45□□□□□ -2.02
SDC3O75056 AL355598.1-201ENST00000604169 202 ntBASIC2.45□□□□□ -2.02
SDC3O75056 Z94722.1-201ENST00000604328 474 ntBASIC2.45□□□□□ -2.02
SDC3O75056 AL049779.4-201ENST00000604500 156 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms