Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC079602.3-201ENST00000623931 403 ntBASIC18.84■□□□□ 0.61
VPS13AQ96RL7 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 AC073648.2-201ENST00000510116 352 ntBASIC18.84■□□□□ 0.61
VPS13AQ96RL7 IGHV3-22-201ENST00000520721 359 ntBASIC18.84■□□□□ 0.61
VPS13AQ96RL7 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 AC121338.2-201ENST00000622535 1744 ntBASIC18.84■□□□□ 0.61
VPS13AQ96RL7 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
VPS13AQ96RL7 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
VPS13AQ96RL7 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
VPS13AQ96RL7 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
VPS13AQ96RL7 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.83■□□□□ 0.61
VPS13AQ96RL7 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.83■□□□□ 0.61
VPS13AQ96RL7 TP73-AS1-207ENST00000624167 988 ntBASIC18.83■□□□□ 0.61
VPS13AQ96RL7 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.83■□□□□ 0.61
VPS13AQ96RL7 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
VPS13AQ96RL7 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS13AQ96RL7 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS13AQ96RL7 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS13AQ96RL7 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS13AQ96RL7 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS13AQ96RL7 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS13AQ96RL7 AL691403.2-201ENST00000618460 490 ntBASIC18.83■□□□□ 0.6
VPS13AQ96RL7 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS13AQ96RL7 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
VPS13AQ96RL7 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS13AQ96RL7 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS13AQ96RL7 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS13AQ96RL7 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC18.83■□□□□ 0.6
VPS13AQ96RL7 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.83■□□□□ 0.6
VPS13AQ96RL7 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS13AQ96RL7 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.83■□□□□ 0.6
VPS13AQ96RL7 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
VPS13AQ96RL7 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS13AQ96RL7 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS13AQ96RL7 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS13AQ96RL7 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13AQ96RL7 AL049796.1-201ENST00000565336 1766 ntBASIC18.82■□□□□ 0.6
VPS13AQ96RL7 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13AQ96RL7 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13AQ96RL7 AL391807.1-203ENST00000604392 2365 ntBASIC18.82■□□□□ 0.6
VPS13AQ96RL7 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13AQ96RL7 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
VPS13AQ96RL7 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13AQ96RL7 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13AQ96RL7 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS13AQ96RL7 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS13AQ96RL7 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS13AQ96RL7 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13AQ96RL7 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13AQ96RL7 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
VPS13AQ96RL7 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13AQ96RL7 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13AQ96RL7 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
VPS13AQ96RL7 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS13AQ96RL7 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.82■□□□□ 0.6
VPS13AQ96RL7 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
VPS13AQ96RL7 MIR7706-201ENST00000613747 67 ntBASIC18.82■□□□□ 0.6
VPS13AQ96RL7 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13AQ96RL7 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13AQ96RL7 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13AQ96RL7 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13AQ96RL7 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS13AQ96RL7 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS13AQ96RL7 AL031284.1-201ENST00000419297 478 ntBASIC18.81■□□□□ 0.6
VPS13AQ96RL7 AC018712.1-201ENST00000455767 687 ntBASIC18.81■□□□□ 0.6
VPS13AQ96RL7 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS13AQ96RL7 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS13AQ96RL7 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS13AQ96RL7 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
VPS13AQ96RL7 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS13AQ96RL7 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS13AQ96RL7 FAM197Y8-203ENST00000450145 560 ntBASIC18.81■□□□□ 0.6
VPS13AQ96RL7 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS13AQ96RL7 Z69720.1-201ENST00000601483 472 ntBASIC18.81■□□□□ 0.6
VPS13AQ96RL7 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS13AQ96RL7 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS13AQ96RL7 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS13AQ96RL7 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.81■□□□□ 0.6
VPS13AQ96RL7 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS13AQ96RL7 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
VPS13AQ96RL7 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS13AQ96RL7 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
VPS13AQ96RL7 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms