Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
USHBP1Q8N6Y0 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC25.1■■□□□ 1.61
USHBP1Q8N6Y0 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
USHBP1Q8N6Y0 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC25.1■■□□□ 1.61
USHBP1Q8N6Y0 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
USHBP1Q8N6Y0 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
USHBP1Q8N6Y0 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
USHBP1Q8N6Y0 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC25.1■■□□□ 1.61
USHBP1Q8N6Y0 AC026396.1-201ENST00000419388 421 ntBASIC25.1■■□□□ 1.61
USHBP1Q8N6Y0 PP7080-204ENST00000510714 601 ntTSL 3 BASIC25.1■■□□□ 1.61
USHBP1Q8N6Y0 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
USHBP1Q8N6Y0 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
USHBP1Q8N6Y0 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
USHBP1Q8N6Y0 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 IRF5-214ENST00000613821 595 ntTSL 5 BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 VPS72-207ENST00000640458 689 ntTSL 5 BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
USHBP1Q8N6Y0 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
USHBP1Q8N6Y0 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
USHBP1Q8N6Y0 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC25.08■■□□□ 1.61
USHBP1Q8N6Y0 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.61
USHBP1Q8N6Y0 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC25.08■■□□□ 1.61
USHBP1Q8N6Y0 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC25.08■■□□□ 1.61
USHBP1Q8N6Y0 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
USHBP1Q8N6Y0 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
USHBP1Q8N6Y0 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
USHBP1Q8N6Y0 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC25.08■■□□□ 1.61
USHBP1Q8N6Y0 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.61
USHBP1Q8N6Y0 SEC1P-202ENST00000473944 940 ntBASIC25.08■■□□□ 1.61
USHBP1Q8N6Y0 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC25.08■■□□□ 1.61
USHBP1Q8N6Y0 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
USHBP1Q8N6Y0 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC25.08■■□□□ 1.61
USHBP1Q8N6Y0 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
USHBP1Q8N6Y0 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.61
USHBP1Q8N6Y0 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC25.08■■□□□ 1.61
USHBP1Q8N6Y0 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
USHBP1Q8N6Y0 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
USHBP1Q8N6Y0 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
USHBP1Q8N6Y0 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.6
USHBP1Q8N6Y0 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC25.08■■□□□ 1.6
USHBP1Q8N6Y0 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.6
USHBP1Q8N6Y0 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
USHBP1Q8N6Y0 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
USHBP1Q8N6Y0 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
USHBP1Q8N6Y0 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
USHBP1Q8N6Y0 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
USHBP1Q8N6Y0 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
USHBP1Q8N6Y0 MCCD1P1-208ENST00000445732 328 ntBASIC25.07■■□□□ 1.6
USHBP1Q8N6Y0 TP73-202ENST00000354437 2140 ntTSL 5 BASIC25.07■■□□□ 1.6
USHBP1Q8N6Y0 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC25.07■■□□□ 1.6
USHBP1Q8N6Y0 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
USHBP1Q8N6Y0 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC25.07■■□□□ 1.6
USHBP1Q8N6Y0 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
USHBP1Q8N6Y0 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
USHBP1Q8N6Y0 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
USHBP1Q8N6Y0 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
USHBP1Q8N6Y0 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
USHBP1Q8N6Y0 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
USHBP1Q8N6Y0 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
USHBP1Q8N6Y0 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
USHBP1Q8N6Y0 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
USHBP1Q8N6Y0 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
USHBP1Q8N6Y0 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
USHBP1Q8N6Y0 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC25.06■■□□□ 1.6
USHBP1Q8N6Y0 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC25.06■■□□□ 1.6
USHBP1Q8N6Y0 MIR3180-5-201ENST00000583743 153 ntBASIC25.06■■□□□ 1.6
USHBP1Q8N6Y0 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC25.06■■□□□ 1.6
USHBP1Q8N6Y0 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
USHBP1Q8N6Y0 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC25.06■■□□□ 1.6
USHBP1Q8N6Y0 AL157888.1-201ENST00000631930 593 ntBASIC25.06■■□□□ 1.6
USHBP1Q8N6Y0 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
USHBP1Q8N6Y0 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
USHBP1Q8N6Y0 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC25.06■■□□□ 1.6
USHBP1Q8N6Y0 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
USHBP1Q8N6Y0 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC25.06■■□□□ 1.6
USHBP1Q8N6Y0 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
USHBP1Q8N6Y0 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC25.05■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms