Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 NME1-207ENST00000480143 964 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC85CA6NKD9 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC21.13■□□□□ 0.97
CCDC85CA6NKD9 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC85CA6NKD9 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC21.13■□□□□ 0.97
CCDC85CA6NKD9 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
CCDC85CA6NKD9 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CCDC85CA6NKD9 AL008721.1-201ENST00000609964 604 ntBASIC21.13■□□□□ 0.97
CCDC85CA6NKD9 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC85CA6NKD9 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CCDC85CA6NKD9 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC85CA6NKD9 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC85CA6NKD9 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC85CA6NKD9 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC85CA6NKD9 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC85CA6NKD9 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC85CA6NKD9 GPAT2P1-201ENST00000444924 1672 ntBASIC21.12■□□□□ 0.97
CCDC85CA6NKD9 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC85CA6NKD9 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC85CA6NKD9 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC85CA6NKD9 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CCDC85CA6NKD9 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC85CA6NKD9 CNN2P11-201ENST00000429351 262 ntBASIC21.12■□□□□ 0.97
CCDC85CA6NKD9 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC85CA6NKD9 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC85CA6NKD9 AC096582.2-201ENST00000510860 516 ntBASIC21.12■□□□□ 0.97
CCDC85CA6NKD9 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC21.12■□□□□ 0.97
CCDC85CA6NKD9 BNIP3P18-201ENST00000593976 575 ntBASIC21.12■□□□□ 0.97
CCDC85CA6NKD9 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC21.12■□□□□ 0.97
CCDC85CA6NKD9 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC85CA6NKD9 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC21.12■□□□□ 0.97
CCDC85CA6NKD9 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC85CA6NKD9 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC85CA6NKD9 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC85CA6NKD9 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC21.12■□□□□ 0.97
CCDC85CA6NKD9 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC85CA6NKD9 CD99-202ENST00000381180 530 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC85CA6NKD9 KRT18P23-201ENST00000435622 1283 ntBASIC21.11■□□□□ 0.97
CCDC85CA6NKD9 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC21.11■□□□□ 0.97
CCDC85CA6NKD9 MIR4469-201ENST00000583919 79 ntBASIC21.11■□□□□ 0.97
CCDC85CA6NKD9 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC85CA6NKD9 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC85CA6NKD9 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC85CA6NKD9 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC85CA6NKD9 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC85CA6NKD9 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
CCDC85CA6NKD9 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC85CA6NKD9 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC85CA6NKD9 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC85CA6NKD9 PAN3-AS1-201ENST00000563843 1351 ntBASIC21.1■□□□□ 0.97
CCDC85CA6NKD9 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC85CA6NKD9 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC85CA6NKD9 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC85CA6NKD9 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC21.1■□□□□ 0.97
CCDC85CA6NKD9 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
CCDC85CA6NKD9 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC85CA6NKD9 DPP3P2-201ENST00000416030 1696 ntBASIC21.1■□□□□ 0.97
CCDC85CA6NKD9 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC85CA6NKD9 METTL26-204ENST00000397665 558 ntTSL 2 BASIC21.1■□□□□ 0.97
CCDC85CA6NKD9 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC21.1■□□□□ 0.97
CCDC85CA6NKD9 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC21.1■□□□□ 0.97
CCDC85CA6NKD9 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC21.1■□□□□ 0.97
CCDC85CA6NKD9 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC85CA6NKD9 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
CCDC85CA6NKD9 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC21.1■□□□□ 0.97
CCDC85CA6NKD9 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC21.1■□□□□ 0.97
CCDC85CA6NKD9 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC85CA6NKD9 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC85CA6NKD9 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC85CA6NKD9 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC21.09■□□□□ 0.97
CCDC85CA6NKD9 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC85CA6NKD9 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC85CA6NKD9 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC85CA6NKD9 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC85CA6NKD9 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC85CA6NKD9 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC85CA6NKD9 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC85CA6NKD9 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC85CA6NKD9 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC85CA6NKD9 BEX3-201ENST00000361298 921 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC85CA6NKD9 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC21.09■□□□□ 0.97
CCDC85CA6NKD9 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC21.09■□□□□ 0.97
CCDC85CA6NKD9 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC85CA6NKD9 MIR4745-201ENST00000577608 62 ntBASIC21.09■□□□□ 0.97
CCDC85CA6NKD9 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC21.09■□□□□ 0.97
CCDC85CA6NKD9 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC21.09■□□□□ 0.97
CCDC85CA6NKD9 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC85CA6NKD9 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CCDC85CA6NKD9 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC85CA6NKD9 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC85CA6NKD9 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC85CA6NKD9 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC85CA6NKD9 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC85CA6NKD9 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC21.08■□□□□ 0.97
CCDC85CA6NKD9 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC85CA6NKD9 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC85CA6NKD9 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC85CA6NKD9 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
CCDC85CA6NKD9 AC022494.1-201ENST00000466044 728 ntBASIC21.08■□□□□ 0.97
CCDC85CA6NKD9 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC85CA6NKD9 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms