Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
USP3Q9Y6I4 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
USP3Q9Y6I4 MUC2-202ENST00000613187 4845 ntBASIC4.87□□□□□ -1.63
USP3Q9Y6I4 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.87□□□□□ -1.63
USP3Q9Y6I4 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.87□□□□□ -1.63
USP3Q9Y6I4 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
USP3Q9Y6I4 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.87□□□□□ -1.63
USP3Q9Y6I4 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
USP3Q9Y6I4 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC4.87□□□□□ -1.63
USP3Q9Y6I4 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.87□□□□□ -1.63
USP3Q9Y6I4 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
USP3Q9Y6I4 SNORA56-201ENST00000383966 129 ntBASIC4.87□□□□□ -1.63
USP3Q9Y6I4 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC4.87□□□□□ -1.63
USP3Q9Y6I4 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.87□□□□□ -1.63
USP3Q9Y6I4 Y_RNA.638-201ENST00000459374 113 ntBASIC4.87□□□□□ -1.63
USP3Q9Y6I4 AC073901.1-201ENST00000462471 408 ntBASIC4.87□□□□□ -1.63
USP3Q9Y6I4 RN7SL738P-201ENST00000470264 297 ntBASIC4.87□□□□□ -1.63
USP3Q9Y6I4 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.87□□□□□ -1.63
USP3Q9Y6I4 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.87□□□□□ -1.63
USP3Q9Y6I4 RN7SKP49-201ENST00000516675 260 ntBASIC4.87□□□□□ -1.63
USP3Q9Y6I4 RNA5SP165-201ENST00000517142 115 ntBASIC4.87□□□□□ -1.63
USP3Q9Y6I4 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.87□□□□□ -1.63
USP3Q9Y6I4 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.87□□□□□ -1.63
USP3Q9Y6I4 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.87□□□□□ -1.63
USP3Q9Y6I4 AC015912.2-201ENST00000571053 181 ntBASIC4.87□□□□□ -1.63
USP3Q9Y6I4 RN7SL52P-201ENST00000584271 284 ntBASIC4.87□□□□□ -1.63
USP3Q9Y6I4 AL356157.2-201ENST00000605122 111 ntBASIC4.87□□□□□ -1.63
USP3Q9Y6I4 AL590240.4-201ENST00000616908 390 ntBASIC4.87□□□□□ -1.63
USP3Q9Y6I4 RN7SL722P-201ENST00000617780 284 ntBASIC4.87□□□□□ -1.63
USP3Q9Y6I4 RN7SL565P-201ENST00000618246 284 ntBASIC4.87□□□□□ -1.63
USP3Q9Y6I4 AC099506.2-201ENST00000623074 221 ntBASIC4.87□□□□□ -1.63
USP3Q9Y6I4 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC4.87□□□□□ -1.63
USP3Q9Y6I4 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
USP3Q9Y6I4 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
USP3Q9Y6I4 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
USP3Q9Y6I4 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.86□□□□□ -1.63
USP3Q9Y6I4 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
USP3Q9Y6I4 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
USP3Q9Y6I4 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
USP3Q9Y6I4 AC021146.4-201ENST00000309229 279 ntBASIC4.86□□□□□ -1.63
USP3Q9Y6I4 Y_RNA.230-201ENST00000364348 109 ntBASIC4.86□□□□□ -1.63
USP3Q9Y6I4 RNU6-47P-201ENST00000383866 107 ntBASIC4.86□□□□□ -1.63
USP3Q9Y6I4 RNU6-318P-201ENST00000384283 103 ntBASIC4.86□□□□□ -1.63
USP3Q9Y6I4 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.86□□□□□ -1.63
USP3Q9Y6I4 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC4.86□□□□□ -1.63
USP3Q9Y6I4 RPL17P36-201ENST00000420302 549 ntBASIC4.86□□□□□ -1.63
USP3Q9Y6I4 AC244098.2-201ENST00000422068 99 ntBASIC4.86□□□□□ -1.63
USP3Q9Y6I4 AC007919.1-201ENST00000429380 217 ntBASIC4.86□□□□□ -1.63
USP3Q9Y6I4 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC4.86□□□□□ -1.63
USP3Q9Y6I4 AC108751.2-201ENST00000469993 231 ntBASIC4.86□□□□□ -1.63
USP3Q9Y6I4 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC4.86□□□□□ -1.63
USP3Q9Y6I4 SNORD116-28-201ENST00000516123 91 ntBASIC4.86□□□□□ -1.63
USP3Q9Y6I4 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC4.86□□□□□ -1.63
USP3Q9Y6I4 MED28P6-201ENST00000558776 231 ntBASIC4.86□□□□□ -1.63
USP3Q9Y6I4 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.86□□□□□ -1.63
USP3Q9Y6I4 AC024153.1-201ENST00000603103 365 ntBASIC4.86□□□□□ -1.63
USP3Q9Y6I4 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
USP3Q9Y6I4 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC4.86□□□□□ -1.63
USP3Q9Y6I4 AC008785.1-201ENST00000624475 456 ntBASIC4.86□□□□□ -1.63
USP3Q9Y6I4 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
USP3Q9Y6I4 OR14L1P-202ENST00000641545 3009 ntBASIC4.86□□□□□ -1.63
USP3Q9Y6I4 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
USP3Q9Y6I4 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.86□□□□□ -1.63
USP3Q9Y6I4 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
USP3Q9Y6I4 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
USP3Q9Y6I4 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
USP3Q9Y6I4 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
USP3Q9Y6I4 AC018529.3-201ENST00000624212 2254 ntBASIC4.85□□□□□ -1.63
USP3Q9Y6I4 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
USP3Q9Y6I4 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.85□□□□□ -1.63
USP3Q9Y6I4 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
USP3Q9Y6I4 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
USP3Q9Y6I4 Z98745.1-201ENST00000402553 494 ntBASIC4.85□□□□□ -1.63
USP3Q9Y6I4 SNORD12B-201ENST00000410433 91 ntBASIC4.85□□□□□ -1.63
USP3Q9Y6I4 RPL23AP1-201ENST00000428990 471 ntBASIC4.85□□□□□ -1.63
USP3Q9Y6I4 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.85□□□□□ -1.63
USP3Q9Y6I4 AL591623.2-201ENST00000449978 222 ntBASIC4.85□□□□□ -1.63
USP3Q9Y6I4 AP001324.2-201ENST00000461163 319 ntBASIC4.85□□□□□ -1.63
USP3Q9Y6I4 AC117440.1-201ENST00000474107 571 ntBASIC4.85□□□□□ -1.63
USP3Q9Y6I4 RPL23AP49-201ENST00000492925 468 ntBASIC4.85□□□□□ -1.63
USP3Q9Y6I4 AC139453.3-201ENST00000493276 369 ntBASIC4.85□□□□□ -1.63
USP3Q9Y6I4 RNU7-110P-201ENST00000516891 62 ntBASIC4.85□□□□□ -1.63
USP3Q9Y6I4 AP005660.1-201ENST00000522972 293 ntBASIC4.85□□□□□ -1.63
USP3Q9Y6I4 AP004607.1-201ENST00000524456 203 ntBASIC4.85□□□□□ -1.63
USP3Q9Y6I4 AC107918.3-201ENST00000533272 382 ntBASIC4.85□□□□□ -1.63
USP3Q9Y6I4 TRAV28-201ENST00000557548 323 ntBASIC4.85□□□□□ -1.63
USP3Q9Y6I4 UBE2Q2P8-201ENST00000560644 102 ntBASIC4.85□□□□□ -1.63
USP3Q9Y6I4 MIR4782-201ENST00000577987 79 ntBASIC4.85□□□□□ -1.63
USP3Q9Y6I4 AC209154.1-201ENST00000582156 337 ntBASIC4.85□□□□□ -1.63
USP3Q9Y6I4 AC011921.3-201ENST00000605540 361 ntBASIC4.85□□□□□ -1.63
USP3Q9Y6I4 BRDTP1-201ENST00000605735 677 ntBASIC4.85□□□□□ -1.63
USP3Q9Y6I4 AC131238.1-201ENST00000617135 328 ntBASIC4.85□□□□□ -1.63
USP3Q9Y6I4 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.85□□□□□ -1.63
USP3Q9Y6I4 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
USP3Q9Y6I4 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
USP3Q9Y6I4 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
USP3Q9Y6I4 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
USP3Q9Y6I4 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
USP3Q9Y6I4 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms