Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 RPS4XP7-201ENST00000406274 780 ntBASIC3.9□□□□□ -1.79
NUP88Q99567 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC3.9□□□□□ -1.79
NUP88Q99567 ARL5AP1-201ENST00000418991 388 ntBASIC3.9□□□□□ -1.79
NUP88Q99567 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.9□□□□□ -1.79
NUP88Q99567 AL590664.1-201ENST00000448065 339 ntBASIC3.9□□□□□ -1.79
NUP88Q99567 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.9□□□□□ -1.79
NUP88Q99567 RPS15AP27-201ENST00000449183 343 ntBASIC3.9□□□□□ -1.79
NUP88Q99567 AC091885.1-201ENST00000506658 268 ntBASIC3.9□□□□□ -1.79
NUP88Q99567 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC3.9□□□□□ -1.79
NUP88Q99567 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC3.9□□□□□ -1.79
NUP88Q99567 LRRC34P2-201ENST00000514850 553 ntBASIC3.9□□□□□ -1.79
NUP88Q99567 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.9□□□□□ -1.79
NUP88Q99567 PSMA2P1-201ENST00000526365 646 ntBASIC3.9□□□□□ -1.79
NUP88Q99567 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.9□□□□□ -1.79
NUP88Q99567 MIR1273C-201ENST00000578669 77 ntBASIC3.9□□□□□ -1.79
NUP88Q99567 AC006557.5-201ENST00000603126 811 ntBASIC3.9□□□□□ -1.79
NUP88Q99567 AL160281.1-201ENST00000605307 311 ntBASIC3.9□□□□□ -1.79
NUP88Q99567 U2.17-201ENST00000611454 95 ntBASIC3.9□□□□□ -1.79
NUP88Q99567 AC099506.2-201ENST00000623074 221 ntBASIC3.9□□□□□ -1.79
NUP88Q99567 Z83843.1-201ENST00000604070 3685 ntBASIC3.9□□□□□ -1.79
NUP88Q99567 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
NUP88Q99567 AC002546.1-201ENST00000588041 2504 ntBASIC3.89□□□□□ -1.79
NUP88Q99567 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.89□□□□□ -1.79
NUP88Q99567 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.89□□□□□ -1.79
NUP88Q99567 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
NUP88Q99567 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
NUP88Q99567 RNU6-395P-201ENST00000365662 106 ntBASIC3.89□□□□□ -1.79
NUP88Q99567 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.89□□□□□ -1.79
NUP88Q99567 RNU6-434P-201ENST00000384376 107 ntBASIC3.89□□□□□ -1.79
NUP88Q99567 RNU6-1179P-201ENST00000384667 107 ntBASIC3.89□□□□□ -1.79
NUP88Q99567 MT-TL1-201ENST00000386347 75 ntBASIC3.89□□□□□ -1.79
NUP88Q99567 RNU6-55P-201ENST00000411092 107 ntBASIC3.89□□□□□ -1.79
NUP88Q99567 RNU6-954P-201ENST00000411355 107 ntBASIC3.89□□□□□ -1.79
NUP88Q99567 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.89□□□□□ -1.79
NUP88Q99567 AC092047.1-201ENST00000424997 240 ntBASIC3.89□□□□□ -1.79
NUP88Q99567 MTATP6P23-201ENST00000440153 476 ntBASIC3.89□□□□□ -1.79
NUP88Q99567 MTND3P10-201ENST00000450967 341 ntBASIC3.89□□□□□ -1.79
NUP88Q99567 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC3.89□□□□□ -1.79
NUP88Q99567 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.89□□□□□ -1.79
NUP88Q99567 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.89□□□□□ -1.79
NUP88Q99567 MTCO3P9-201ENST00000506989 781 ntBASIC3.89□□□□□ -1.79
NUP88Q99567 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.89□□□□□ -1.79
NUP88Q99567 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.89□□□□□ -1.79
NUP88Q99567 AP003122.3-201ENST00000526316 255 ntBASIC3.89□□□□□ -1.79
NUP88Q99567 AC084851.1-201ENST00000529105 249 ntBASIC3.89□□□□□ -1.79
NUP88Q99567 AC118273.2-201ENST00000532092 465 ntBASIC3.89□□□□□ -1.79
NUP88Q99567 AC011602.1-201ENST00000546484 331 ntBASIC3.89□□□□□ -1.79
NUP88Q99567 AC078814.3-201ENST00000553036 491 ntBASIC3.89□□□□□ -1.79
NUP88Q99567 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.89□□□□□ -1.79
NUP88Q99567 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.89□□□□□ -1.79
NUP88Q99567 MIR3609-201ENST00000582661 80 ntBASIC3.89□□□□□ -1.79
NUP88Q99567 AC011471.1-201ENST00000585766 187 ntBASIC3.89□□□□□ -1.79
NUP88Q99567 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.89□□□□□ -1.79
NUP88Q99567 AL035413.2-201ENST00000604801 525 ntBASIC3.89□□□□□ -1.79
NUP88Q99567 RNU6-89P-201ENST00000606519 100 ntBASIC3.89□□□□□ -1.79
NUP88Q99567 Z82243.1-201ENST00000609432 473 ntBASIC3.89□□□□□ -1.79
NUP88Q99567 U6.42-201ENST00000618440 107 ntBASIC3.89□□□□□ -1.79
NUP88Q99567 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.89□□□□□ -1.79
NUP88Q99567 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
NUP88Q99567 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
NUP88Q99567 AL359693.1-201ENST00000614959 2407 ntBASIC3.89□□□□□ -1.79
NUP88Q99567 AL513302.2-201ENST00000562313 1842 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
NUP88Q99567 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
NUP88Q99567 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
NUP88Q99567 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
NUP88Q99567 FTLP6-201ENST00000355274 422 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 MIR30E-201ENST00000362104 92 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
NUP88Q99567 SNORA32.2-201ENST00000384049 122 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 FGF7P8-201ENST00000402994 292 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 Y_RNA.615-201ENST00000410769 117 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 AC007560.1-201ENST00000426912 237 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.88□□□□□ -1.79
NUP88Q99567 TRAPPC2P3-201ENST00000443200 321 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 AL357552.1-201ENST00000445254 415 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 AL671855.1-201ENST00000446875 1203 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 AC008264.1-201ENST00000447612 367 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC3.88□□□□□ -1.79
NUP88Q99567 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.88□□□□□ -1.79
NUP88Q99567 RPL23AP62-201ENST00000463396 453 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 AC012181.1-201ENST00000479895 423 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 AC139453.3-201ENST00000493276 369 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 CCDC34P1-201ENST00000507441 517 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 AC104136.1-201ENST00000512969 394 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 RNU6-1231P-201ENST00000517185 103 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.88□□□□□ -1.79
NUP88Q99567 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC3.88□□□□□ -1.79
NUP88Q99567 CENPUP1-201ENST00000526649 1202 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.88□□□□□ -1.79
NUP88Q99567 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.88□□□□□ -1.79
NUP88Q99567 MIR4424-201ENST00000585257 86 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 AC092747.3-201ENST00000603769 301 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 AC006504.8-201ENST00000621046 635 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 AC006111.3-201ENST00000622137 383 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 AP003400.5-201ENST00000624827 617 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.88□□□□□ -1.79
NUP88Q99567 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
NUP88Q99567 AC022336.2-201ENST00000568966 2538 ntBASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 156.3 ms