Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.1□□□□□ -1.75
USP53Q70EK8 SNRPEP9-201ENST00000436794 238 ntBASIC4.1□□□□□ -1.75
USP53Q70EK8 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC4.1□□□□□ -1.75
USP53Q70EK8 GSTA11P-201ENST00000452866 669 ntBASIC4.1□□□□□ -1.75
USP53Q70EK8 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.1□□□□□ -1.75
USP53Q70EK8 AF213884.1-201ENST00000488102 463 ntBASIC4.1□□□□□ -1.75
USP53Q70EK8 AL592156.1-201ENST00000508758 304 ntBASIC4.1□□□□□ -1.75
USP53Q70EK8 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC4.1□□□□□ -1.75
USP53Q70EK8 RNU6-120P-201ENST00000516077 103 ntBASIC4.1□□□□□ -1.75
USP53Q70EK8 RNU6-572P-201ENST00000516724 80 ntBASIC4.1□□□□□ -1.75
USP53Q70EK8 RNA5SP468-201ENST00000516782 93 ntBASIC4.1□□□□□ -1.75
USP53Q70EK8 RNU6-264P-201ENST00000517134 104 ntBASIC4.1□□□□□ -1.75
USP53Q70EK8 IGKV2-23-201ENST00000518729 323 ntBASIC4.1□□□□□ -1.75
USP53Q70EK8 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC4.1□□□□□ -1.75
USP53Q70EK8 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC4.1□□□□□ -1.75
USP53Q70EK8 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC4.1□□□□□ -1.75
USP53Q70EK8 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
USP53Q70EK8 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
USP53Q70EK8 AC138627.2-201ENST00000624202 601 ntBASIC4.1□□□□□ -1.75
USP53Q70EK8 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
USP53Q70EK8 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
USP53Q70EK8 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
USP53Q70EK8 RLIMP1-201ENST00000339626 1680 ntBASIC4.1□□□□□ -1.75
USP53Q70EK8 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
USP53Q70EK8 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
USP53Q70EK8 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.75
USP53Q70EK8 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
USP53Q70EK8 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
USP53Q70EK8 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC4.09□□□□□ -1.75
USP53Q70EK8 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
USP53Q70EK8 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.75
USP53Q70EK8 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.09□□□□□ -1.75
USP53Q70EK8 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.09□□□□□ -1.75
USP53Q70EK8 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
USP53Q70EK8 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
USP53Q70EK8 SNORD46.1-201ENST00000364139 104 ntBASIC4.09□□□□□ -1.75
USP53Q70EK8 Y_RNA.333-201ENST00000365274 102 ntBASIC4.09□□□□□ -1.75
USP53Q70EK8 MIR1911-201ENST00000410783 80 ntBASIC4.09□□□□□ -1.75
USP53Q70EK8 RNU2-71P-201ENST00000411395 189 ntBASIC4.09□□□□□ -1.75
USP53Q70EK8 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.09□□□□□ -1.75
USP53Q70EK8 AC098614.2-201ENST00000426040 255 ntBASIC4.09□□□□□ -1.75
USP53Q70EK8 AL158071.1-201ENST00000430315 461 ntBASIC4.09□□□□□ -1.75
USP53Q70EK8 RPS6P12-201ENST00000432491 726 ntBASIC4.09□□□□□ -1.75
USP53Q70EK8 RPL23AP50-201ENST00000434149 455 ntBASIC4.09□□□□□ -1.75
USP53Q70EK8 NDUFB4P6-201ENST00000436819 366 ntBASIC4.09□□□□□ -1.75
USP53Q70EK8 RPS29P7-201ENST00000439662 171 ntBASIC4.09□□□□□ -1.75
USP53Q70EK8 AL078601.1-201ENST00000444542 271 ntBASIC4.09□□□□□ -1.75
USP53Q70EK8 ANP32BP2-201ENST00000454525 545 ntBASIC4.09□□□□□ -1.75
USP53Q70EK8 RPL12P25-201ENST00000455592 494 ntBASIC4.09□□□□□ -1.75
USP53Q70EK8 AC092798.1-201ENST00000458542 409 ntBASIC4.09□□□□□ -1.75
USP53Q70EK8 RNU6-1037P-201ENST00000459571 107 ntBASIC4.09□□□□□ -1.75
USP53Q70EK8 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.09□□□□□ -1.75
USP53Q70EK8 RPL30P5-201ENST00000494923 336 ntBASIC4.09□□□□□ -1.75
USP53Q70EK8 SNORD116.3-201ENST00000517176 78 ntBASIC4.09□□□□□ -1.75
USP53Q70EK8 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
USP53Q70EK8 OR5D17P-201ENST00000531492 978 ntBASIC4.09□□□□□ -1.75
USP53Q70EK8 SUB1P3-201ENST00000564581 315 ntBASIC4.09□□□□□ -1.75
USP53Q70EK8 AC010653.1-201ENST00000571108 881 ntBASIC4.09□□□□□ -1.75
USP53Q70EK8 AC099506.2-201ENST00000623074 221 ntBASIC4.09□□□□□ -1.75
USP53Q70EK8 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.09□□□□□ -1.75
USP53Q70EK8 AC118273.1-201ENST00000525324 3006 ntBASIC4.09□□□□□ -1.75
USP53Q70EK8 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.09□□□□□ -1.76
USP53Q70EK8 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.76
USP53Q70EK8 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.08□□□□□ -1.76
USP53Q70EK8 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
USP53Q70EK8 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
USP53Q70EK8 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.08□□□□□ -1.76
USP53Q70EK8 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
USP53Q70EK8 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
USP53Q70EK8 Y_RNA.80-201ENST00000362996 102 ntBASIC4.08□□□□□ -1.76
USP53Q70EK8 RNU6-525P-201ENST00000363685 104 ntBASIC4.08□□□□□ -1.76
USP53Q70EK8 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
USP53Q70EK8 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.08□□□□□ -1.76
USP53Q70EK8 RPL21P65-201ENST00000406094 466 ntBASIC4.08□□□□□ -1.76
USP53Q70EK8 AC007560.1-201ENST00000426912 237 ntBASIC4.08□□□□□ -1.76
USP53Q70EK8 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC4.08□□□□□ -1.76
USP53Q70EK8 AC093151.1-201ENST00000427711 313 ntBASIC4.08□□□□□ -1.76
USP53Q70EK8 TOMM20P4-201ENST00000427861 435 ntBASIC4.08□□□□□ -1.76
USP53Q70EK8 ABCF2P2-201ENST00000450549 296 ntBASIC4.08□□□□□ -1.76
USP53Q70EK8 RPL23AP45-201ENST00000476406 468 ntBASIC4.08□□□□□ -1.76
USP53Q70EK8 RPS29P19-201ENST00000479709 171 ntBASIC4.08□□□□□ -1.76
USP53Q70EK8 AC068781.1-201ENST00000488231 618 ntBASIC4.08□□□□□ -1.76
USP53Q70EK8 AC116655.1-201ENST00000508324 901 ntBASIC4.08□□□□□ -1.76
USP53Q70EK8 ACA59.1-201ENST00000515966 143 ntBASIC4.08□□□□□ -1.76
USP53Q70EK8 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.08□□□□□ -1.76
USP53Q70EK8 AL117187.1-201ENST00000555482 181 ntBASIC4.08□□□□□ -1.76
USP53Q70EK8 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC4.08□□□□□ -1.76
USP53Q70EK8 HMGB1P14-201ENST00000557424 591 ntBASIC4.08□□□□□ -1.76
USP53Q70EK8 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
USP53Q70EK8 AL139395.1-201ENST00000603662 160 ntBASIC4.08□□□□□ -1.76
USP53Q70EK8 AC006023.2-201ENST00000609916 167 ntBASIC4.08□□□□□ -1.76
USP53Q70EK8 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
USP53Q70EK8 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
USP53Q70EK8 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.08□□□□□ -1.76
USP53Q70EK8 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
USP53Q70EK8 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.08□□□□□ -1.76
USP53Q70EK8 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.08□□□□□ -1.76
USP53Q70EK8 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.07□□□□□ -1.76
USP53Q70EK8 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
USP53Q70EK8 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 161.1 ms