Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AL157871.3-201ENST00000557231 293 ntBASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 AC113139.1-201ENST00000605049 239 ntBASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 uc_338.15-201ENST00000615470 191 ntBASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 RMST_7.1-201ENST00000621935 268 ntBASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 AC048347.1-201ENST00000624621 427 ntBASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 AL161912.2-201ENST00000565707 3007 ntBASIC3.52□□□□□ -1.85
PTCHD3Q3KNS1 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 Y_RNA.33-201ENST00000362591 102 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 Y_RNA.184-201ENST00000363884 108 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 RNA5SP42-201ENST00000364278 115 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 Y_RNA.813-201ENST00000364639 102 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 MIR578-201ENST00000384828 96 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 RNU6-607P-201ENST00000411283 108 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 AC007919.1-201ENST00000429380 217 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 NDUFB4P6-201ENST00000436819 366 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 PIGFP3-201ENST00000441918 722 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 KC877373.1-201ENST00000479066 408 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 AC106707.2-201ENST00000484182 374 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 RNU1-61P-201ENST00000516107 151 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 Y_RNA.675-201ENST00000516389 149 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 LRRC37A5P-203ENST00000580181 585 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 MIR4795-201ENST00000584182 89 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 MIR3672-201ENST00000584290 82 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 MIR3942-201ENST00000585264 109 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 AC073539.2-201ENST00000597113 165 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 AC006077.1-201ENST00000604746 343 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 U3.45-201ENST00000607547 219 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 AC019176.2-201ENST00000611579 315 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 DUSP12P1-201ENST00000612874 516 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 AL110115.1-201ENST00000614396 364 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 AC084757.4-201ENST00000616350 526 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 AC022336.2-201ENST00000568966 2538 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 AC118273.1-201ENST00000525324 3006 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 AF127577.6-201ENST00000623352 2191 ntBASIC3.51□□□□□ -1.85
PTCHD3Q3KNS1 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 RNU4-79P-201ENST00000362764 141 ntBASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 Y_RNA.474-201ENST00000384341 102 ntBASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 MIR450B-201ENST00000401182 78 ntBASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 RPS4XP7-201ENST00000406274 780 ntBASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 ATP5A1P2-201ENST00000412323 255 ntBASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 AL159169.1-201ENST00000421119 127 ntBASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 HMGB3P11-201ENST00000440127 604 ntBASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 PRSS3P4-201ENST00000453323 162 ntBASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 HMGN2P16-201ENST00000456802 261 ntBASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 LIAS-206ENST00000513731 826 ntTSL 5 BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 MIR5692C1-201ENST00000585309 91 ntBASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 AC023043.2-201ENST00000589678 1026 ntBASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 AC136601.2-201ENST00000604356 474 ntBASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 ATP1B3P1-201ENST00000605365 821 ntBASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 AL121757.2-201ENST00000611223 313 ntBASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 SNORD39.4-201ENST00000620099 78 ntBASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 AL133216.2-202ENST00000634512 349 ntBASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 AL049641.1-201ENST00000441055 1948 ntBASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
PTCHD3Q3KNS1 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 122.2 ms