Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC093838.1-201ENST00000613014 469 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 AC013470.4-201ENST00000619978 986 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC0.37□□□□□ -2.35
COL7A1Q02388 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.37□□□□□ -2.35
COL7A1Q02388 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC0.37□□□□□ -2.35
COL7A1Q02388 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC0.37□□□□□ -2.35
COL7A1Q02388 COL6A4P2-205ENST00000509855 506 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC0.37□□□□□ -2.35
COL7A1Q02388 AC004817.2-201ENST00000561794 651 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 SNORA3A-201ENST00000364113 130 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 SNORA4.3-201ENST00000365564 137 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 SNORA51.6-201ENST00000384151 125 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 Y_RNA.447-201ENST00000384184 113 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 AL512604.1-201ENST00000404812 257 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 AC009296.1-201ENST00000443146 155 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 AC118282.2-201ENST00000508739 374 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 NDUFB4P2-201ENST00000509515 391 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 RNU6-319P-201ENST00000516025 108 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC0.37□□□□□ -2.35
COL7A1Q02388 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC0.37□□□□□ -2.35
COL7A1Q02388 MIR3198-2-201ENST00000577868 80 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC0.37□□□□□ -2.35
COL7A1Q02388 AC025165.5-201ENST00000602802 578 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 AC024060.1-201ENST00000607052 494 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 AL357075.2-201ENST00000614906 189 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.36□□□□□ -2.35
COL7A1Q02388 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC0.36□□□□□ -2.35
COL7A1Q02388 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.36□□□□□ -2.35
COL7A1Q02388 Y_RNA.185-201ENST00000363894 100 ntBASIC0.36□□□□□ -2.35
COL7A1Q02388 RPS4XP3-201ENST00000398541 413 ntBASIC0.36□□□□□ -2.35
COL7A1Q02388 AL356131.1-201ENST00000405826 414 ntBASIC0.36□□□□□ -2.35
COL7A1Q02388 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC0.36□□□□□ -2.35
COL7A1Q02388 RPS29P8-201ENST00000445109 171 ntBASIC0.36□□□□□ -2.35
COL7A1Q02388 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC0.36□□□□□ -2.35
COL7A1Q02388 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC0.36□□□□□ -2.35
COL7A1Q02388 AC093770.1-201ENST00000511559 571 ntBASIC0.36□□□□□ -2.35
COL7A1Q02388 AC136932.1-201ENST00000574771 208 ntBASIC0.36□□□□□ -2.35
COL7A1Q02388 CLIC4P2-201ENST00000601934 717 ntBASIC0.36□□□□□ -2.35
COL7A1Q02388 AL139344.1-201ENST00000605228 195 ntBASIC0.36□□□□□ -2.35
COL7A1Q02388 PRR13P7-201ENST00000605538 430 ntBASIC0.36□□□□□ -2.35
COL7A1Q02388 AC020923.1-201ENST00000624021 917 ntBASIC0.36□□□□□ -2.35
COL7A1Q02388 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC0.36□□□□□ -2.35
COL7A1Q02388 MIR26B-201ENST00000362251 77 ntBASIC0.36□□□□□ -2.35
COL7A1Q02388 MIR604-201ENST00000384880 94 ntBASIC0.36□□□□□ -2.35
COL7A1Q02388 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC0.36□□□□□ -2.35
COL7A1Q02388 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.36□□□□□ -2.35
COL7A1Q02388 RN7SKP61-201ENST00000410642 295 ntBASIC0.36□□□□□ -2.35
COL7A1Q02388 AC099677.1-201ENST00000420575 175 ntBASIC0.36□□□□□ -2.35
COL7A1Q02388 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC0.36□□□□□ -2.35
COL7A1Q02388 RPL23AP6-201ENST00000446637 472 ntBASIC0.36□□□□□ -2.35
COL7A1Q02388 MTND2P8-201ENST00000450555 1025 ntBASIC0.36□□□□□ -2.35
COL7A1Q02388 RPL31P60-201ENST00000478450 367 ntBASIC0.36□□□□□ -2.35
COL7A1Q02388 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.36□□□□□ -2.35
COL7A1Q02388 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC0.36□□□□□ -2.35
COL7A1Q02388 MIR126-201ENST00000362291 85 ntBASIC0.35□□□□□ -2.35
COL7A1Q02388 RNU6-923P-201ENST00000364753 107 ntBASIC0.35□□□□□ -2.35
COL7A1Q02388 Y_RNA.468-201ENST00000384298 102 ntBASIC0.35□□□□□ -2.35
COL7A1Q02388 RN7SKP142-201ENST00000411236 328 ntBASIC0.35□□□□□ -2.35
COL7A1Q02388 AC006461.1-201ENST00000412637 326 ntBASIC0.35□□□□□ -2.35
COL7A1Q02388 MTCYBP24-201ENST00000420387 1106 ntBASIC0.35□□□□□ -2.35
COL7A1Q02388 AC023347.2-201ENST00000433994 462 ntBASIC0.35□□□□□ -2.35
COL7A1Q02388 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC0.35□□□□□ -2.35
COL7A1Q02388 AC139453.3-201ENST00000493276 369 ntBASIC0.35□□□□□ -2.35
COL7A1Q02388 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC0.35□□□□□ -2.35
COL7A1Q02388 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC0.35□□□□□ -2.35
COL7A1Q02388 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC0.35□□□□□ -2.35
COL7A1Q02388 FAM60BP-201ENST00000578364 658 ntBASIC0.35□□□□□ -2.35
COL7A1Q02388 VN1R81P-201ENST00000602085 372 ntBASIC0.35□□□□□ -2.35
COL7A1Q02388 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC0.35□□□□□ -2.35
COL7A1Q02388 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.35□□□□□ -2.35
COL7A1Q02388 RNU6-263P-201ENST00000363811 107 ntBASIC0.35□□□□□ -2.35
COL7A1Q02388 RNA5SP252-201ENST00000391131 119 ntBASIC0.35□□□□□ -2.35
COL7A1Q02388 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC0.35□□□□□ -2.35
COL7A1Q02388 MIR934-201ENST00000401241 83 ntBASIC0.35□□□□□ -2.35
COL7A1Q02388 AC083875.1-201ENST00000419509 405 ntBASIC0.35□□□□□ -2.35
COL7A1Q02388 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC0.35□□□□□ -2.35
COL7A1Q02388 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.35□□□□□ -2.35
COL7A1Q02388 RPS24P6-201ENST00000452670 400 ntBASIC0.35□□□□□ -2.35
COL7A1Q02388 RNU7-26P-201ENST00000458980 63 ntBASIC0.35□□□□□ -2.35
COL7A1Q02388 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC0.35□□□□□ -2.35
COL7A1Q02388 SNRPGP16-201ENST00000533275 226 ntBASIC0.35□□□□□ -2.35
COL7A1Q02388 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC0.35□□□□□ -2.35
COL7A1Q02388 AC073111.2-201ENST00000605657 1075 ntBASIC0.35□□□□□ -2.35
COL7A1Q02388 AC025588.4-201ENST00000615802 908 ntBASIC0.35□□□□□ -2.35
COL7A1Q02388 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC0.35□□□□□ -2.35
COL7A1Q02388 LINC02211-204ENST00000642024 1070 ntBASIC0.35□□□□□ -2.35
COL7A1Q02388 RNA5SP98-201ENST00000363158 137 ntBASIC0.34□□□□□ -2.35
COL7A1Q02388 RNU6-1187P-201ENST00000364771 110 ntBASIC0.34□□□□□ -2.35
COL7A1Q02388 RNU6-532P-201ENST00000384318 107 ntBASIC0.34□□□□□ -2.35
COL7A1Q02388 Y_RNA.495-201ENST00000384435 112 ntBASIC0.34□□□□□ -2.35
COL7A1Q02388 MIR508-201ENST00000384857 115 ntBASIC0.34□□□□□ -2.35
COL7A1Q02388 MIR320B1-201ENST00000390209 79 ntBASIC0.34□□□□□ -2.35
COL7A1Q02388 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC0.34□□□□□ -2.35
COL7A1Q02388 PRELID3BP1-201ENST00000457142 540 ntBASIC0.34□□□□□ -2.35
COL7A1Q02388 AL031183.1-201ENST00000457667 207 ntBASIC0.34□□□□□ -2.35
COL7A1Q02388 AC087879.1-201ENST00000474343 374 ntBASIC0.34□□□□□ -2.35
COL7A1Q02388 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC0.34□□□□□ -2.35
COL7A1Q02388 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC0.34□□□□□ -2.35
COL7A1Q02388 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC0.34□□□□□ -2.35
COL7A1Q02388 AC112518.2-201ENST00000508565 425 ntBASIC0.34□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms