Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXD3P31249 AC009093.8-201ENST00000641769 292 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
HOXD3P31249 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXD3P31249 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.01□□□□□ -1.93
HOXD3P31249 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
HOXD3P31249 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.01□□□□□ -1.93
HOXD3P31249 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3□□□□□ -1.93
HOXD3P31249 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3□□□□□ -1.93
HOXD3P31249 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3□□□□□ -1.93
HOXD3P31249 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3□□□□□ -1.93
HOXD3P31249 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3□□□□□ -1.93
HOXD3P31249 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3□□□□□ -1.93
HOXD3P31249 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC3□□□□□ -1.93
HOXD3P31249 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3□□□□□ -1.93
HOXD3P31249 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3□□□□□ -1.93
HOXD3P31249 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
HOXD3P31249 MIR325-201ENST00000385260 98 ntBASIC3□□□□□ -1.93
HOXD3P31249 SNORD73A-201ENST00000386062 65 ntBASIC3□□□□□ -1.93
HOXD3P31249 snosnR66.1-201ENST00000391095 99 ntBASIC3□□□□□ -1.93
HOXD3P31249 PTMAP5-201ENST00000393073 333 ntBASIC3□□□□□ -1.93
HOXD3P31249 MTCYBP4-201ENST00000401524 249 ntBASIC3□□□□□ -1.93
HOXD3P31249 RNA5SP39-201ENST00000411245 120 ntBASIC3□□□□□ -1.93
HOXD3P31249 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3□□□□□ -1.93
HOXD3P31249 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3□□□□□ -1.93
HOXD3P31249 MTCO2P27-201ENST00000420740 428 ntBASIC3□□□□□ -1.93
HOXD3P31249 GPM6BP2-201ENST00000432046 144 ntBASIC3□□□□□ -1.93
HOXD3P31249 AC083863.1-201ENST00000438811 231 ntBASIC3□□□□□ -1.93
HOXD3P31249 GPM6BP1-201ENST00000446387 144 ntBASIC3□□□□□ -1.93
HOXD3P31249 AL451050.1-201ENST00000450126 415 ntBASIC3□□□□□ -1.93
HOXD3P31249 MTCO3P10-201ENST00000455912 772 ntBASIC3□□□□□ -1.93
HOXD3P31249 AC110768.1-201ENST00000509222 400 ntBASIC3□□□□□ -1.93
HOXD3P31249 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3□□□□□ -1.93
HOXD3P31249 AC092436.3-201ENST00000511788 257 ntBASIC3□□□□□ -1.93
HOXD3P31249 RNA5SP290-201ENST00000517133 127 ntBASIC3□□□□□ -1.93
HOXD3P31249 IGKV2-23-201ENST00000518729 323 ntBASIC3□□□□□ -1.93
HOXD3P31249 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC3□□□□□ -1.93
HOXD3P31249 AC087369.1-201ENST00000520775 996 ntBASIC3□□□□□ -1.93
HOXD3P31249 CYCSP27-201ENST00000527643 293 ntBASIC3□□□□□ -1.93
HOXD3P31249 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC3□□□□□ -1.93
HOXD3P31249 TRAV37-201ENST00000553906 342 ntBASIC3□□□□□ -1.93
HOXD3P31249 AL163153.1-201ENST00000554223 283 ntBASIC3□□□□□ -1.93
HOXD3P31249 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3□□□□□ -1.93
HOXD3P31249 MIR1273C-201ENST00000578669 77 ntBASIC3□□□□□ -1.93
HOXD3P31249 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3□□□□□ -1.93
HOXD3P31249 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3□□□□□ -1.93
HOXD3P31249 AC080078.3-201ENST00000605407 463 ntBASIC3□□□□□ -1.93
HOXD3P31249 AC019176.2-201ENST00000611579 315 ntBASIC3□□□□□ -1.93
HOXD3P31249 AC005344.1-201ENST00000613391 459 ntBASIC3□□□□□ -1.93
HOXD3P31249 MIR6128-201ENST00000615528 109 ntBASIC3□□□□□ -1.93
HOXD3P31249 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3□□□□□ -1.93
HOXD3P31249 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3□□□□□ -1.93
HOXD3P31249 AL353746.1-201ENST00000566293 6881 ntBASIC3□□□□□ -1.93
HOXD3P31249 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
HOXD3P31249 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3□□□□□ -1.93
HOXD3P31249 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
HOXD3P31249 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3□□□□□ -1.93
HOXD3P31249 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC3□□□□□ -1.93
HOXD3P31249 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
HOXD3P31249 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
HOXD3P31249 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC2.99□□□□□ -1.93
HOXD3P31249 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC2.99□□□□□ -1.93
HOXD3P31249 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC2.99□□□□□ -1.93
HOXD3P31249 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
HOXD3P31249 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
HOXD3P31249 SNORA63-201ENST00000363450 132 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 Y_RNA.245-201ENST00000364493 95 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 SNORD42.2-201ENST00000365570 69 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
HOXD3P31249 DEFB109C-201ENST00000382575 264 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 DEFB109B-201ENST00000382656 264 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 SNORA5A-201ENST00000384111 134 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 U8.11-201ENST00000384699 133 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 U8.12-201ENST00000384701 133 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 MIR493-201ENST00000385254 89 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 RNU6-607P-201ENST00000411283 108 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 RPL7P10-201ENST00000417407 739 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXD3P31249 AL139396.1-201ENST00000421137 167 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 AL158156.1-201ENST00000422509 473 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXD3P31249 HMGB1P9-201ENST00000429856 646 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 RPL23AP69-201ENST00000431134 458 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC2.99□□□□□ -1.93
HOXD3P31249 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.99□□□□□ -1.93
HOXD3P31249 BRK1P2-201ENST00000442875 223 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 FABP5P15-201ENST00000453566 214 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 U8.18-201ENST00000459285 133 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 AC130509.1-201ENST00000464158 433 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 RPS20P22-201ENST00000473700 357 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 HMGN1P10-201ENST00000474557 553 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 AL160314.1-201ENST00000490836 438 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 AC025445.1-201ENST00000502728 300 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 RNU1-61P-201ENST00000516107 151 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 RNU1-95P-201ENST00000516357 160 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 RNU1-128P-201ENST00000516704 160 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 RNA5SP468-201ENST00000516782 93 ntBASIC2.99□□□□□ -1.93
HOXD3P31249 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXD3P31249 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms