Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 HLFP1-201ENST00000402375 499 ntBASIC4.71□□□□□ -1.66
MSX1P28360 ELOCP19-201ENST00000411919 318 ntBASIC4.71□□□□□ -1.66
MSX1P28360 COX5BP7-201ENST00000414780 274 ntBASIC4.71□□□□□ -1.66
MSX1P28360 AL035461.1-201ENST00000421490 332 ntBASIC4.71□□□□□ -1.66
MSX1P28360 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
MSX1P28360 AL049745.1-201ENST00000433953 286 ntBASIC4.71□□□□□ -1.66
MSX1P28360 TEX41-209ENST00000451478 452 ntTSL 2 BASIC4.71□□□□□ -1.66
MSX1P28360 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
MSX1P28360 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC4.71□□□□□ -1.66
MSX1P28360 RN7SKP260-201ENST00000516907 149 ntBASIC4.71□□□□□ -1.66
MSX1P28360 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC4.71□□□□□ -1.66
MSX1P28360 UBL5P4-201ENST00000562584 236 ntBASIC4.71□□□□□ -1.66
MSX1P28360 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC4.71□□□□□ -1.66
MSX1P28360 AC055872.1-201ENST00000570978 278 ntBASIC4.71□□□□□ -1.66
MSX1P28360 AC105254.2-201ENST00000603636 436 ntBASIC4.71□□□□□ -1.66
MSX1P28360 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.71□□□□□ -1.66
MSX1P28360 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.71□□□□□ -1.66
MSX1P28360 AC023043.4-201ENST00000612081 449 ntBASIC4.71□□□□□ -1.66
MSX1P28360 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
MSX1P28360 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4.71□□□□□ -1.66
MSX1P28360 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.71□□□□□ -1.66
MSX1P28360 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
MSX1P28360 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
MSX1P28360 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
MSX1P28360 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.71□□□□□ -1.66
MSX1P28360 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.71□□□□□ -1.66
MSX1P28360 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
MSX1P28360 AC093535.2-201ENST00000624769 2326 ntBASIC4.71□□□□□ -1.66
MSX1P28360 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC4.7□□□□□ -1.66
MSX1P28360 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.7□□□□□ -1.66
MSX1P28360 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.7□□□□□ -1.66
MSX1P28360 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
MSX1P28360 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
MSX1P28360 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
MSX1P28360 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
MSX1P28360 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
MSX1P28360 RN7SKP104-201ENST00000362605 328 ntBASIC4.7□□□□□ -1.66
MSX1P28360 Y_RNA.75-201ENST00000362927 97 ntBASIC4.7□□□□□ -1.66
MSX1P28360 RNU5B-2P-201ENST00000363036 113 ntBASIC4.7□□□□□ -1.66
MSX1P28360 RN7SKP224-201ENST00000364140 325 ntBASIC4.7□□□□□ -1.66
MSX1P28360 RNU6-142P-201ENST00000384019 107 ntBASIC4.7□□□□□ -1.66
MSX1P28360 RNU6-44P-201ENST00000384045 107 ntBASIC4.7□□□□□ -1.66
MSX1P28360 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
MSX1P28360 U3.37-201ENST00000408528 213 ntBASIC4.7□□□□□ -1.66
MSX1P28360 COX6CP13-201ENST00000428703 226 ntBASIC4.7□□□□□ -1.66
MSX1P28360 IFNA11P-201ENST00000446352 526 ntBASIC4.7□□□□□ -1.66
MSX1P28360 AC006026.2-201ENST00000457376 180 ntBASIC4.7□□□□□ -1.66
MSX1P28360 RN7SL443P-201ENST00000464331 290 ntBASIC4.7□□□□□ -1.66
MSX1P28360 AC097484.1-201ENST00000471148 389 ntBASIC4.7□□□□□ -1.66
MSX1P28360 AC006463.2-201ENST00000473326 348 ntBASIC4.7□□□□□ -1.66
MSX1P28360 RPS27AP9-201ENST00000477681 438 ntBASIC4.7□□□□□ -1.66
MSX1P28360 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC4.7□□□□□ -1.66
MSX1P28360 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.7□□□□□ -1.66
MSX1P28360 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.7□□□□□ -1.66
MSX1P28360 AC091874.1-201ENST00000511402 339 ntBASIC4.7□□□□□ -1.66
MSX1P28360 RNU6-58P-201ENST00000517143 103 ntBASIC4.7□□□□□ -1.66
MSX1P28360 SUMO2P18-201ENST00000518873 252 ntBASIC4.7□□□□□ -1.66
MSX1P28360 AC016256.1-201ENST00000547971 354 ntBASIC4.7□□□□□ -1.66
MSX1P28360 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC4.7□□□□□ -1.66
MSX1P28360 AL590392.1-201ENST00000604960 446 ntBASIC4.7□□□□□ -1.66
MSX1P28360 AC068831.7-201ENST00000616954 363 ntBASIC4.7□□□□□ -1.66
MSX1P28360 MIR6810-201ENST00000622701 70 ntBASIC4.7□□□□□ -1.66
MSX1P28360 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC4.7□□□□□ -1.66
MSX1P28360 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.7□□□□□ -1.66
MSX1P28360 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.7□□□□□ -1.66
MSX1P28360 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.7□□□□□ -1.66
MSX1P28360 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
MSX1P28360 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
MSX1P28360 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
MSX1P28360 AC104623.2-202ENST00000623477 4002 ntBASIC4.7□□□□□ -1.66
MSX1P28360 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
MSX1P28360 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC4.7□□□□□ -1.66
MSX1P28360 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
MSX1P28360 AP000542.2-201ENST00000623199 6179 ntBASIC4.7□□□□□ -1.66
MSX1P28360 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC4.69□□□□□ -1.66
MSX1P28360 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
MSX1P28360 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
MSX1P28360 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.69□□□□□ -1.66
MSX1P28360 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
MSX1P28360 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
MSX1P28360 Y_RNA.121-201ENST00000363309 113 ntBASIC4.69□□□□□ -1.66
MSX1P28360 RNU6-151P-201ENST00000364158 107 ntBASIC4.69□□□□□ -1.66
MSX1P28360 Y_RNA.261-201ENST00000364631 102 ntBASIC4.69□□□□□ -1.66
MSX1P28360 Y_RNA.412-201ENST00000384001 104 ntBASIC4.69□□□□□ -1.66
MSX1P28360 SNORA68.2-201ENST00000391263 128 ntBASIC4.69□□□□□ -1.66
MSX1P28360 RNA5SP31-201ENST00000411144 127 ntBASIC4.69□□□□□ -1.66
MSX1P28360 FAR2P2-201ENST00000413041 594 ntBASIC4.69□□□□□ -1.66
MSX1P28360 DDX39BP1-205ENST00000422507 192 ntBASIC4.69□□□□□ -1.66
MSX1P28360 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC4.69□□□□□ -1.66
MSX1P28360 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC4.69□□□□□ -1.66
MSX1P28360 SEPT7P4-201ENST00000437076 306 ntBASIC4.69□□□□□ -1.66
MSX1P28360 AC005154.2-201ENST00000438110 379 ntBASIC4.69□□□□□ -1.66
MSX1P28360 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.69□□□□□ -1.66
MSX1P28360 AC243964.1-201ENST00000441814 261 ntBASIC4.69□□□□□ -1.66
MSX1P28360 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC4.69□□□□□ -1.66
MSX1P28360 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC4.69□□□□□ -1.66
MSX1P28360 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.69□□□□□ -1.66
MSX1P28360 AC114982.1-201ENST00000469402 321 ntBASIC4.69□□□□□ -1.66
MSX1P28360 RNU6-191P-201ENST00000516295 94 ntBASIC4.69□□□□□ -1.66
MSX1P28360 RNU6-919P-201ENST00000516731 104 ntBASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms