Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 SNRPGP6-201ENST00000451124 220 ntBASIC2.65□□□□□ -1.99
HOXD4P09016 AC003071.1-201ENST00000451219 789 ntBASIC2.65□□□□□ -1.99
HOXD4P09016 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.65□□□□□ -1.99
HOXD4P09016 AC010631.1-201ENST00000474150 156 ntBASIC2.65□□□□□ -1.99
HOXD4P09016 AC019235.1-201ENST00000503847 207 ntBASIC2.65□□□□□ -1.99
HOXD4P09016 AC009646.1-201ENST00000510455 318 ntBASIC2.65□□□□□ -1.99
HOXD4P09016 RNU6-718P-201ENST00000516166 105 ntBASIC2.65□□□□□ -1.99
HOXD4P09016 AC011979.2-201ENST00000527568 352 ntBASIC2.65□□□□□ -1.99
HOXD4P09016 AP003072.2-201ENST00000527756 676 ntBASIC2.65□□□□□ -1.99
HOXD4P09016 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC2.65□□□□□ -1.99
HOXD4P09016 AK6P1-201ENST00000540219 478 ntBASIC2.65□□□□□ -1.99
HOXD4P09016 AC128657.1-201ENST00000549459 145 ntBASIC2.65□□□□□ -1.99
HOXD4P09016 AF038458.1-201ENST00000588406 262 ntBASIC2.65□□□□□ -1.99
HOXD4P09016 MIR4275-201ENST00000636486 87 ntBASIC2.65□□□□□ -1.99
HOXD4P09016 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.65□□□□□ -1.99
HOXD4P09016 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.65□□□□□ -1.99
HOXD4P09016 GABRG2-229ENST00000641017 3628 ntBASIC2.64□□□□□ -1.99
HOXD4P09016 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
HOXD4P09016 ELF2P3-201ENST00000445099 1506 ntBASIC2.64□□□□□ -1.99
HOXD4P09016 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
HOXD4P09016 HSPE1P11-201ENST00000339579 310 ntBASIC2.64□□□□□ -1.99
HOXD4P09016 RNU4-12P-201ENST00000365233 139 ntBASIC2.64□□□□□ -1.99
HOXD4P09016 RNU6-108P-201ENST00000365558 107 ntBASIC2.64□□□□□ -1.99
HOXD4P09016 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
HOXD4P09016 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
HOXD4P09016 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
HOXD4P09016 AL445529.1-201ENST00000398713 389 ntBASIC2.64□□□□□ -1.99
HOXD4P09016 AL359634.1-202ENST00000404721 284 ntBASIC2.64□□□□□ -1.99
HOXD4P09016 MRPL50P2-201ENST00000416821 482 ntBASIC2.64□□□□□ -1.99
HOXD4P09016 MTATP6P18-201ENST00000417994 673 ntBASIC2.64□□□□□ -1.99
HOXD4P09016 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC2.64□□□□□ -1.99
HOXD4P09016 RPL32P28-201ENST00000443577 397 ntBASIC2.64□□□□□ -1.99
HOXD4P09016 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.64□□□□□ -1.99
HOXD4P09016 RPL23AP11-201ENST00000475260 469 ntBASIC2.64□□□□□ -1.99
HOXD4P09016 AC117522.3-201ENST00000507974 584 ntBASIC2.64□□□□□ -1.99
HOXD4P09016 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC2.64□□□□□ -1.99
HOXD4P09016 AC100870.1-201ENST00000522035 505 ntBASIC2.64□□□□□ -1.99
HOXD4P09016 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.64□□□□□ -1.99
HOXD4P09016 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.64□□□□□ -1.99
HOXD4P09016 HSPE1P20-201ENST00000538133 289 ntBASIC2.64□□□□□ -1.99
HOXD4P09016 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.64□□□□□ -1.99
HOXD4P09016 AC004486.1-201ENST00000546846 233 ntBASIC2.64□□□□□ -1.99
HOXD4P09016 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.64□□□□□ -1.99
HOXD4P09016 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC2.64□□□□□ -1.99
HOXD4P09016 AC005951.2-201ENST00000576282 495 ntBASIC2.64□□□□□ -1.99
HOXD4P09016 MIR3945-201ENST00000581853 98 ntBASIC2.64□□□□□ -1.99
HOXD4P09016 Z84480.1-201ENST00000605131 311 ntBASIC2.64□□□□□ -1.99
HOXD4P09016 AC013412.1-201ENST00000610687 192 ntBASIC2.64□□□□□ -1.99
HOXD4P09016 SNHG22-203ENST00000617833 660 ntBASIC2.64□□□□□ -1.99
HOXD4P09016 AC009161.2-201ENST00000624626 138 ntBASIC2.64□□□□□ -1.99
HOXD4P09016 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.64□□□□□ -1.99
HOXD4P09016 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC2.64□□□□□ -1.99
HOXD4P09016 AP003122.5-201ENST00000527668 3766 ntBASIC2.64□□□□□ -1.99
HOXD4P09016 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC2.64□□□□□ -1.99
HOXD4P09016 AL136360.1-201ENST00000503377 1900 ntBASIC2.64□□□□□ -1.99
HOXD4P09016 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
HOXD4P09016 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.63□□□□□ -1.99
HOXD4P09016 SDAD1P2-201ENST00000441308 2028 ntBASIC2.63□□□□□ -1.99
HOXD4P09016 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
HOXD4P09016 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
HOXD4P09016 RNU6-1097P-201ENST00000363586 107 ntBASIC2.63□□□□□ -1.99
HOXD4P09016 RNU6-1284P-201ENST00000363701 100 ntBASIC2.63□□□□□ -1.99
HOXD4P09016 RNU6-74P-201ENST00000384235 107 ntBASIC2.63□□□□□ -1.99
HOXD4P09016 MIR1-2-201ENST00000384961 85 ntBASIC2.63□□□□□ -1.99
HOXD4P09016 SNORD115-47-201ENST00000391226 86 ntBASIC2.63□□□□□ -1.99
HOXD4P09016 AC068050.1-201ENST00000394891 380 ntBASIC2.63□□□□□ -1.99
HOXD4P09016 AL590002.1-201ENST00000406554 418 ntBASIC2.63□□□□□ -1.99
HOXD4P09016 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
HOXD4P09016 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.63□□□□□ -1.99
HOXD4P09016 USP9YP18-201ENST00000425912 695 ntBASIC2.63□□□□□ -1.99
HOXD4P09016 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC2.63□□□□□ -1.99
HOXD4P09016 AL121769.1-201ENST00000469473 401 ntBASIC2.63□□□□□ -1.99
HOXD4P09016 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC2.63□□□□□ -1.99
HOXD4P09016 RN7SL432P-201ENST00000484057 298 ntBASIC2.63□□□□□ -1.99
HOXD4P09016 AC079382.1-201ENST00000493346 557 ntBASIC2.63□□□□□ -1.99
HOXD4P09016 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.63□□□□□ -1.99
HOXD4P09016 RNU2-10P-201ENST00000516375 211 ntBASIC2.63□□□□□ -1.99
HOXD4P09016 RNU7-51P-201ENST00000516560 62 ntBASIC2.63□□□□□ -1.99
HOXD4P09016 RNU6-410P-201ENST00000517006 107 ntBASIC2.63□□□□□ -1.99
HOXD4P09016 HMGB1P41-201ENST00000520234 440 ntBASIC2.63□□□□□ -1.99
HOXD4P09016 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC2.63□□□□□ -1.99
HOXD4P09016 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
HOXD4P09016 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.63□□□□□ -1.99
HOXD4P09016 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC2.63□□□□□ -1.99
HOXD4P09016 AC138761.3-201ENST00000579993 334 ntBASIC2.63□□□□□ -1.99
HOXD4P09016 AC098848.2-201ENST00000588023 330 ntBASIC2.63□□□□□ -1.99
HOXD4P09016 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.63□□□□□ -1.99
HOXD4P09016 AC025449.1-201ENST00000603896 529 ntBASIC2.63□□□□□ -1.99
HOXD4P09016 AL121992.2-201ENST00000606262 256 ntBASIC2.63□□□□□ -1.99
HOXD4P09016 AP002360.4-201ENST00000606980 481 ntBASIC2.63□□□□□ -1.99
HOXD4P09016 AC017083.3-201ENST00000609955 700 ntBASIC2.63□□□□□ -1.99
HOXD4P09016 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
HOXD4P09016 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
HOXD4P09016 AL161431.1-201ENST00000618966 4205 ntBASIC2.63□□□□□ -1.99
HOXD4P09016 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
HOXD4P09016 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC2.62□□□□□ -1.99
HOXD4P09016 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.62□□□□□ -1.99
HOXD4P09016 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC2.62□□□□□ -1.99
HOXD4P09016 AC073325.2-201ENST00000339545 159 ntBASIC2.62□□□□□ -1.99
HOXD4P09016 RNU6-188P-201ENST00000364207 107 ntBASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 154.7 ms