Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 OR2AQ1P-201ENST00000451972 200 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXA3O43365 snoU109.2-201ENST00000459316 135 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 AC010469.1-201ENST00000463864 576 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 AP000873.1-201ENST00000463987 400 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXA3O43365 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXA3O43365 RN7SL817P-201ENST00000480777 288 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 ATP6V1G1P6-201ENST00000504007 334 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 AK3P2-201ENST00000507976 429 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 NDUFB4P9-201ENST00000511646 388 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 RNU6-377P-201ENST00000515965 102 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 AC131281.1-201ENST00000522984 164 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXA3O43365 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXA3O43365 AC025884.1-201ENST00000556034 378 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXA3O43365 MYL12BP1-201ENST00000569826 507 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 AC015912.2-201ENST00000571053 181 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXA3O43365 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXA3O43365 AL139395.1-201ENST00000603662 160 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 MIR1244-1-201ENST00000612829 85 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 HMGB1P24-202ENST00000615653 685 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 AL138825.1-201ENST00000618587 192 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXA3O43365 MIR1244-3-201ENST00000635744 85 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 MIR1244-2-201ENST00000636449 85 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 MIR1244-4-202ENST00000636813 85 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 ARHGAP42P3-201ENST00000443989 2508 ntBASIC3.54□□□□□ -1.84
HOXA3O43365 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXA3O43365 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
HOXA3O43365 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA3O43365 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.54□□□□□ -1.84
HOXA3O43365 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA3O43365 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.53□□□□□ -1.84
HOXA3O43365 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
HOXA3O43365 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXA3O43365 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.53□□□□□ -1.84
HOXA3O43365 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXA3O43365 Y_RNA.210-201ENST00000364161 110 ntBASIC3.53□□□□□ -1.84
HOXA3O43365 RNU6-1318P-201ENST00000365389 103 ntBASIC3.53□□□□□ -1.84
HOXA3O43365 MIR325-201ENST00000385260 98 ntBASIC3.53□□□□□ -1.84
HOXA3O43365 RNU6-1197P-201ENST00000391183 107 ntBASIC3.53□□□□□ -1.84
HOXA3O43365 EIF4EP2-201ENST00000422816 654 ntBASIC3.53□□□□□ -1.84
HOXA3O43365 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
HOXA3O43365 RPL23AP52-201ENST00000439311 478 ntBASIC3.53□□□□□ -1.84
HOXA3O43365 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
HOXA3O43365 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.53□□□□□ -1.84
HOXA3O43365 AC013470.1-201ENST00000453438 462 ntBASIC3.53□□□□□ -1.84
HOXA3O43365 RNU7-169P-201ENST00000459456 61 ntBASIC3.53□□□□□ -1.84
HOXA3O43365 RPL31P13-201ENST00000484151 370 ntBASIC3.53□□□□□ -1.84
HOXA3O43365 RPL22P13-201ENST00000493291 347 ntBASIC3.53□□□□□ -1.84
HOXA3O43365 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXA3O43365 AC005921.1-201ENST00000510589 286 ntBASIC3.53□□□□□ -1.84
HOXA3O43365 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXA3O43365 RNU6-794P-201ENST00000517261 64 ntBASIC3.53□□□□□ -1.84
HOXA3O43365 AC144568.1-201ENST00000520139 137 ntBASIC3.53□□□□□ -1.84
HOXA3O43365 AC040926.1-201ENST00000530195 238 ntBASIC3.53□□□□□ -1.84
HOXA3O43365 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXA3O43365 AC091178.1-203ENST00000584586 279 ntBASIC3.53□□□□□ -1.84
HOXA3O43365 SRGNP1-201ENST00000603392 451 ntBASIC3.53□□□□□ -1.84
HOXA3O43365 AC079587.1-201ENST00000603846 277 ntBASIC3.53□□□□□ -1.84
HOXA3O43365 AL591034.3-201ENST00000605511 685 ntBASIC3.53□□□□□ -1.84
HOXA3O43365 AC090617.7-201ENST00000623952 126 ntBASIC3.53□□□□□ -1.84
HOXA3O43365 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXA3O43365 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
HOXA3O43365 ZNF299P-201ENST00000406845 1804 ntBASIC3.53□□□□□ -1.84
HOXA3O43365 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXA3O43365 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.53□□□□□ -1.84
HOXA3O43365 MTND5P9-201ENST00000503854 1755 ntBASIC3.53□□□□□ -1.84
HOXA3O43365 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.53□□□□□ -1.84
HOXA3O43365 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXA3O43365 MTND5P27-201ENST00000428871 1720 ntBASIC3.53□□□□□ -1.85
HOXA3O43365 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA3O43365 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA3O43365 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXA3O43365 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA3O43365 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA3O43365 AC010733.2-201ENST00000589496 5702 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA3O43365 RNU1-108P-201ENST00000362556 161 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 RNA5SP388-201ENST00000362584 119 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 RNU6-428P-201ENST00000362942 107 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 RNU6-595P-201ENST00000363944 107 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 RNU1-64P-201ENST00000365443 163 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 Y_RNA.512-201ENST00000384518 102 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 RNU6-140P-201ENST00000384566 108 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 MIR493-201ENST00000385254 89 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 SNORA11F-201ENST00000408237 128 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 RNU6-628P-201ENST00000410675 107 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXA3O43365 AC098614.2-201ENST00000426040 255 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 RPL21P2-201ENST00000440049 481 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 NDUFS5P3-201ENST00000450668 321 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 RN7SL812P-201ENST00000493791 279 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 AC093852.1-201ENST00000503587 266 ntBASIC3.52□□□□□ -1.85
HOXA3O43365 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms