Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 HMGB1P37-201ENST00000439613 609 ntBASIC4.01□□□□□ -1.77
CBX4O00257 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC4.01□□□□□ -1.77
CBX4O00257 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC4.01□□□□□ -1.77
CBX4O00257 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CBX4O00257 RPL30P15-201ENST00000457129 321 ntBASIC4.01□□□□□ -1.77
CBX4O00257 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CBX4O00257 FTH1P9-201ENST00000513251 355 ntBASIC4.01□□□□□ -1.77
CBX4O00257 RNU1-61P-201ENST00000516107 151 ntBASIC4.01□□□□□ -1.77
CBX4O00257 YPEL5P3-201ENST00000547227 352 ntBASIC4.01□□□□□ -1.77
CBX4O00257 MIR3944-201ENST00000581277 108 ntBASIC4.01□□□□□ -1.77
CBX4O00257 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC4.01□□□□□ -1.77
CBX4O00257 CYP2C61P-201ENST00000604072 290 ntBASIC4.01□□□□□ -1.77
CBX4O00257 AC124303.1-201ENST00000605703 360 ntBASIC4.01□□□□□ -1.77
CBX4O00257 Y_RNA.812-201ENST00000610788 101 ntBASIC4.01□□□□□ -1.77
CBX4O00257 Y_RNA.784-201ENST00000613803 101 ntBASIC4.01□□□□□ -1.77
CBX4O00257 AL157817.1-201ENST00000614264 790 ntBASIC4.01□□□□□ -1.77
CBX4O00257 AL110115.1-201ENST00000614396 364 ntBASIC4.01□□□□□ -1.77
CBX4O00257 Y_RNA.787-201ENST00000616522 101 ntBASIC4.01□□□□□ -1.77
CBX4O00257 Y_RNA.780-201ENST00000617336 101 ntBASIC4.01□□□□□ -1.77
CBX4O00257 Y_RNA.801-201ENST00000619005 101 ntBASIC4.01□□□□□ -1.77
CBX4O00257 AL354798.1-201ENST00000622505 329 ntBASIC4.01□□□□□ -1.77
CBX4O00257 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.01□□□□□ -1.77
CBX4O00257 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CBX4O00257 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CBX4O00257 AC118273.1-201ENST00000525324 3006 ntBASIC4.01□□□□□ -1.77
CBX4O00257 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CBX4O00257 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
CBX4O00257 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC4□□□□□ -1.77
CBX4O00257 AC022336.2-201ENST00000568966 2538 ntBASIC4□□□□□ -1.77
CBX4O00257 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
CBX4O00257 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC4□□□□□ -1.77
CBX4O00257 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC4□□□□□ -1.77
CBX4O00257 LINC02471-203ENST00000641941 4752 ntBASIC4□□□□□ -1.77
CBX4O00257 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4□□□□□ -1.77
CBX4O00257 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4□□□□□ -1.77
CBX4O00257 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
CBX4O00257 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
CBX4O00257 SNORD14B-201ENST00000364533 90 ntBASIC4□□□□□ -1.77
CBX4O00257 RNU6-1106P-201ENST00000390845 107 ntBASIC4□□□□□ -1.77
CBX4O00257 SNORA40C-201ENST00000391285 128 ntBASIC4□□□□□ -1.77
CBX4O00257 RPL23AP48-201ENST00000406913 488 ntBASIC4□□□□□ -1.77
CBX4O00257 AL592148.1-201ENST00000413568 445 ntBASIC4□□□□□ -1.77
CBX4O00257 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC4□□□□□ -1.77
CBX4O00257 AL078601.1-201ENST00000444542 271 ntBASIC4□□□□□ -1.77
CBX4O00257 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4□□□□□ -1.77
CBX4O00257 RNU7-152P-201ENST00000458982 64 ntBASIC4□□□□□ -1.77
CBX4O00257 AC005741.1-201ENST00000511094 432 ntBASIC4□□□□□ -1.77
CBX4O00257 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4□□□□□ -1.77
CBX4O00257 RNU6-572P-201ENST00000516724 80 ntBASIC4□□□□□ -1.77
CBX4O00257 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC4□□□□□ -1.77
CBX4O00257 AC104576.1-201ENST00000524225 88 ntBASIC4□□□□□ -1.77
CBX4O00257 CASP1P1-201ENST00000526345 212 ntBASIC4□□□□□ -1.77
CBX4O00257 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4□□□□□ -1.77
CBX4O00257 AC008739.3-201ENST00000603262 127 ntBASIC4□□□□□ -1.77
CBX4O00257 AL161756.2-201ENST00000604597 246 ntBASIC4□□□□□ -1.77
CBX4O00257 ELOCP5-201ENST00000604924 333 ntBASIC4□□□□□ -1.77
CBX4O00257 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC4□□□□□ -1.77
CBX4O00257 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC4□□□□□ -1.77
CBX4O00257 AC134503.1-201ENST00000633048 54 ntBASIC4□□□□□ -1.77
CBX4O00257 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
CBX4O00257 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CBX4O00257 MTND4P27-201ENST00000450813 1354 ntBASIC4□□□□□ -1.77
CBX4O00257 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC4□□□□□ -1.77
CBX4O00257 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4□□□□□ -1.77
CBX4O00257 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CBX4O00257 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CBX4O00257 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CBX4O00257 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
CBX4O00257 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CBX4O00257 Y_RNA.187-201ENST00000363918 113 ntBASIC3.99□□□□□ -1.77
CBX4O00257 RNU6-384P-201ENST00000364900 104 ntBASIC3.99□□□□□ -1.77
CBX4O00257 MIR10A-201ENST00000385043 110 ntBASIC3.99□□□□□ -1.77
CBX4O00257 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
CBX4O00257 AL445529.1-201ENST00000398713 389 ntBASIC3.99□□□□□ -1.77
CBX4O00257 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.99□□□□□ -1.77
CBX4O00257 AC098614.2-201ENST00000426040 255 ntBASIC3.99□□□□□ -1.77
CBX4O00257 AC083863.1-201ENST00000438811 231 ntBASIC3.99□□□□□ -1.77
CBX4O00257 HMGN2P16-201ENST00000456802 261 ntBASIC3.99□□□□□ -1.77
CBX4O00257 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.99□□□□□ -1.77
CBX4O00257 AC084357.1-201ENST00000473404 255 ntBASIC3.99□□□□□ -1.77
CBX4O00257 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.99□□□□□ -1.77
CBX4O00257 AL135752.1-201ENST00000479477 471 ntBASIC3.99□□□□□ -1.77
CBX4O00257 RN7SL323P-201ENST00000494712 295 ntBASIC3.99□□□□□ -1.77
CBX4O00257 Y_RNA.708-201ENST00000516950 96 ntBASIC3.99□□□□□ -1.77
CBX4O00257 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC3.99□□□□□ -1.77
CBX4O00257 AP003072.1-201ENST00000531740 145 ntBASIC3.99□□□□□ -1.77
CBX4O00257 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC3.99□□□□□ -1.77
CBX4O00257 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.99□□□□□ -1.77
CBX4O00257 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.99□□□□□ -1.77
CBX4O00257 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.99□□□□□ -1.77
CBX4O00257 AC078795.3-201ENST00000602913 472 ntBASIC3.99□□□□□ -1.77
CBX4O00257 AL355598.1-201ENST00000604169 202 ntBASIC3.99□□□□□ -1.77
CBX4O00257 AP000787.2-201ENST00000604432 568 ntBASIC3.99□□□□□ -1.77
CBX4O00257 AC007938.3-201ENST00000604965 623 ntBASIC3.99□□□□□ -1.77
CBX4O00257 AC098657.3-201ENST00000620434 263 ntBASIC3.99□□□□□ -1.77
CBX4O00257 AC027309.3-201ENST00000623419 351 ntBASIC3.99□□□□□ -1.77
CBX4O00257 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
CBX4O00257 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.99□□□□□ -1.77
CBX4O00257 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.99□□□□□ -1.77
CBX4O00257 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms