Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 AC234771.5-201ENST00000600161 514 ntBASIC4.56□□□□□ -1.68
AP4E1Q9UPM8 AC079587.1-201ENST00000603846 277 ntBASIC4.56□□□□□ -1.68
AP4E1Q9UPM8 RNU6-6P-201ENST00000606623 107 ntBASIC4.56□□□□□ -1.68
AP4E1Q9UPM8 LINC00901.1-201ENST00000617252 152 ntBASIC4.56□□□□□ -1.68
AP4E1Q9UPM8 AL360181.4-201ENST00000621752 134 ntBASIC4.56□□□□□ -1.68
AP4E1Q9UPM8 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.56□□□□□ -1.68
AP4E1Q9UPM8 U6.92-201ENST00000636464 89 ntBASIC4.56□□□□□ -1.68
AP4E1Q9UPM8 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.56□□□□□ -1.68
AP4E1Q9UPM8 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.56□□□□□ -1.68
AP4E1Q9UPM8 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
AP4E1Q9UPM8 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.56□□□□□ -1.68
AP4E1Q9UPM8 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
AP4E1Q9UPM8 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
AP4E1Q9UPM8 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 RNU6-827P-201ENST00000365553 106 ntBASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 MIR1911-201ENST00000410783 80 ntBASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 AL356387.2-201ENST00000422272 243 ntBASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 RPS29P33-201ENST00000456717 146 ntBASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 HSPE1P6-201ENST00000479457 291 ntBASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 RN7SL812P-201ENST00000493791 279 ntBASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 AL442163.3-201ENST00000554110 156 ntBASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 AL161798.1-201ENST00000604630 131 ntBASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 AC006077.1-201ENST00000604746 343 ntBASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 AC004852.3-201ENST00000614131 326 ntBASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 MIR376A1-201ENST00000616574 68 ntBASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 AP000346.3-201ENST00000622821 210 ntBASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 SDAD1P2-201ENST00000441308 2028 ntBASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
AP4E1Q9UPM8 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 Y_RNA.65-201ENST00000362846 100 ntBASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 Y_RNA.269-201ENST00000364685 89 ntBASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 MTCO3P29-201ENST00000432119 779 ntBASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 BX679664.1-201ENST00000434429 253 ntBASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 AL136097.1-201ENST00000456945 913 ntBASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 AC015795.1-201ENST00000513669 327 ntBASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 RNU6-1338P-201ENST00000516328 91 ntBASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 AC134698.5-201ENST00000519444 336 ntBASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 AC007458.1-201ENST00000542812 373 ntBASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 BX284668.6-201ENST00000606899 438 ntBASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 RN7SL722P-201ENST00000617780 284 ntBASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 RN7SL565P-201ENST00000618246 284 ntBASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 AC127459.3-201ENST00000624328 466 ntBASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 AC025031.4-201ENST00000621248 3271 ntBASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.54□□□□□ -1.68
AP4E1Q9UPM8 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 HSPA8P1-201ENST00000425843 1833 ntBASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 MIR412-201ENST00000362142 91 ntBASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 Y_RNA.16-201ENST00000362421 102 ntBASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 RNU1-94P-201ENST00000362627 173 ntBASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 Y_RNA.54-201ENST00000362766 105 ntBASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 RNU6-1266P-201ENST00000362794 105 ntBASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 RNU6-1167P-201ENST00000363227 94 ntBASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 U3.6-201ENST00000363622 211 ntBASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 Y_RNA.200-201ENST00000364018 102 ntBASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 SNORD14B-201ENST00000364533 90 ntBASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 RNU6-187P-201ENST00000384139 106 ntBASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 RNU6-662P-201ENST00000384253 104 ntBASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 Y_RNA.464-201ENST00000384282 110 ntBASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 MIR153-1-201ENST00000384914 90 ntBASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 RNU6-1025P-201ENST00000410629 104 ntBASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 MTATP6P29-201ENST00000415057 132 ntBASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 AC091286.1-201ENST00000431233 461 ntBASIC4.53□□□□□ -1.68
AP4E1Q9UPM8 AC011998.1-201ENST00000433403 117 ntBASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms