Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AC000123.2-201ENST00000623124 461 ntBASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL17A1Q9UMD9 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 RNU4-44P-201ENST00000363050 141 ntBASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 RNU6-7-201ENST00000364784 107 ntBASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 Y_RNA.297-201ENST00000364950 91 ntBASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 RNU6-8-201ENST00000365467 107 ntBASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 RNU6-338P-201ENST00000383888 105 ntBASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 RNU6-1207P-201ENST00000384343 107 ntBASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 Y_RNA.482-201ENST00000384377 111 ntBASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 MIR1-2-201ENST00000384961 85 ntBASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 U3.20-201ENST00000390909 217 ntBASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 RPL21P1-201ENST00000399532 476 ntBASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 RN7SKP111-201ENST00000410349 271 ntBASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 AC069285.2-201ENST00000440210 275 ntBASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 PRPS1P1-201ENST00000445305 876 ntBASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 RPS29P26-201ENST00000477483 171 ntBASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 TRBVA-201ENST00000498804 316 ntBASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 AC116655.1-201ENST00000508324 901 ntBASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 RNU4-29P-201ENST00000515943 174 ntBASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 RNU6-699P-201ENST00000517081 110 ntBASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 GNAI2P1-201ENST00000541815 315 ntBASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 AL591424.2-201ENST00000617023 128 ntBASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL17A1Q9UMD9 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 IPO8P1-201ENST00000455509 3109 ntBASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 RNU6-704P-201ENST00000364162 103 ntBASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 RNU2-51P-201ENST00000410708 197 ntBASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 AC012065.2-201ENST00000421295 375 ntBASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 SKA2P1-201ENST00000425592 390 ntBASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 OR4K11P-201ENST00000431829 904 ntBASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 CR769767.1-201ENST00000436337 346 ntBASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 RNU7-66P-201ENST00000459469 62 ntBASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 AC104057.1-201ENST00000515547 497 ntBASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 RNU6-1220P-201ENST00000517126 108 ntBASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 SUMO2P20-201ENST00000520803 283 ntBASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 SULT1C2P2-201ENST00000562517 294 ntBASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 AC018552.3-201ENST00000567416 561 ntBASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 OR4K8P-201ENST00000578842 1048 ntBASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 AL139395.1-201ENST00000603662 160 ntBASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 OR6R2P-201ENST00000609216 300 ntBASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 AC015813.4-201ENST00000610469 179 ntBASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 SDR42E1P2-201ENST00000614861 481 ntBASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 SDR42E1P4-201ENST00000620894 481 ntBASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 AC011460.1-201ENST00000636268 1834 ntBASIC5.34□□□□□ -1.55
COL17A1Q9UMD9 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 RNA5SP235-201ENST00000365411 114 ntBASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 RNU4-48P-201ENST00000365559 182 ntBASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 RNU6-48P-201ENST00000384161 107 ntBASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 Y_RNA.478-201ENST00000384358 107 ntBASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 RNU6-601P-201ENST00000384540 107 ntBASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 AC069218.2-201ENST00000411665 344 ntBASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 ATP6V0E1P4-201ENST00000427294 242 ntBASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 AL590233.1-201ENST00000430017 456 ntBASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 AC006512.1-201ENST00000468816 291 ntBASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 AC093767.1-201ENST00000504523 156 ntBASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 AC022616.4-201ENST00000522985 181 ntBASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 AC091925.2-201ENST00000625059 256 ntBASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 MPP6-209ENST00000625307 126 ntTSL 5 BASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 AL137790.1-201ENST00000634283 177 ntBASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 AL606537.1-201ENST00000607258 2011 ntBASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC5.33□□□□□ -1.56
COL17A1Q9UMD9 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 RNU6-522P-201ENST00000364497 107 ntBASIC5.32□□□□□ -1.56
COL17A1Q9UMD9 RNU4-66P-201ENST00000365199 138 ntBASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms