Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 RPL26P27-201ENST00000414397 437 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 MTCO1P21-201ENST00000416634 589 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 MTATP6P18-201ENST00000417994 673 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 SKA2P1-201ENST00000425592 390 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 RN7SL601P-201ENST00000471221 293 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 RPL36AP51-201ENST00000487216 318 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 RPS15AP34-201ENST00000487776 387 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 AC006445.1-201ENST00000491925 405 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 AC079382.1-201ENST00000493346 557 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 RN7SL504P-201ENST00000494496 287 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 RBBP4P6-201ENST00000508098 202 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 RNU1-103P-201ENST00000516502 125 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 ZDHHC20P3-201ENST00000531576 336 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 AC008521.1-201ENST00000587471 187 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 AC068790.6-201ENST00000602558 258 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 AC025165.5-201ENST00000602802 578 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 AL391646.1-201ENST00000603860 190 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 AC025449.1-201ENST00000603896 529 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 AL355598.1-201ENST00000604169 202 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 SRP54-214ENST00000630962 162 ntTSL 5 BASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 AC103988.1-201ENST00000566382 2177 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.9
LIMA1Q9UHB6 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
LIMA1Q9UHB6 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.15□□□□□ -1.9
LIMA1Q9UHB6 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.9
LIMA1Q9UHB6 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 SNORA71.3-201ENST00000362582 128 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 SNORA71.1-201ENST00000364523 117 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 RNU4-48P-201ENST00000365559 182 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 RNU1-73P-201ENST00000383971 164 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 RNU6-1027P-201ENST00000383998 107 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 Y_RNA.517-201ENST00000384551 106 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 Y_RNA.576-201ENST00000384781 102 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 RNU4-55P-201ENST00000410731 137 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 NDUFS5P4-201ENST00000412983 318 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 MTCO2P19-201ENST00000427513 598 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 AC002486.1-201ENST00000435098 391 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 DNAJC19P4-201ENST00000440115 345 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 DPPA3P1-201ENST00000448050 469 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 GSTA11P-201ENST00000452866 669 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 RPL23AP11-201ENST00000475260 469 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 RPS27AP10-201ENST00000496103 208 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 AC009901.1-201ENST00000506703 541 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 RPL37P25-201ENST00000507308 276 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 AC098591.2-201ENST00000510152 315 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 RN7SKP272-201ENST00000516988 232 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 PSMA2P1-201ENST00000526365 646 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 FAM92A1P1-201ENST00000528023 890 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 RANP3-201ENST00000530970 276 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 AL157871.3-201ENST00000557231 293 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 AL133393.1-201ENST00000603277 287 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 AC012468.1-201ENST00000604888 430 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 AL021997.1-201ENST00000605757 193 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 AC007684.1-201ENST00000609671 477 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 AP001486.3-201ENST00000615334 372 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 AC015540.1-201ENST00000615828 501 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 AC084757.4-201ENST00000616350 526 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 MIR6075-201ENST00000620782 95 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 MIR6733-201ENST00000635723 61 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.15□□□□□ -1.91
LIMA1Q9UHB6 MTND4P35-201ENST00000604257 1375 ntBASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 AC096644.4-201ENST00000563417 2912 ntBASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 Y_RNA.1-201ENST00000352915 104 ntBASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 RNU6-1120P-201ENST00000362988 108 ntBASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 SNORD115-7-201ENST00000365306 82 ntBASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 RNU6-192P-201ENST00000391253 100 ntBASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 SAR1AP2-201ENST00000392696 594 ntBASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 AL158156.1-201ENST00000422509 473 ntBASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 AL365496.1-201ENST00000426885 215 ntBASIC3.14□□□□□ -1.91
LIMA1Q9UHB6 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 131.6 ms