Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RNU6-217P-201ENST00000384164 104 ntBASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 RNU6-1145P-201ENST00000384246 107 ntBASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 U8.10-201ENST00000384260 133 ntBASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 RNU6-918P-201ENST00000391219 106 ntBASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 AL358075.3-201ENST00000426289 226 ntBASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 WARS2P1-201ENST00000429678 537 ntBASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 AC073465.2-201ENST00000440938 498 ntBASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 SNORA40.9-201ENST00000515895 93 ntBASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 CR383656.8-201ENST00000549046 145 ntBASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 AC136624.4-201ENST00000573044 370 ntBASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 MIR5571-201ENST00000577998 113 ntBASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 MIR5096-201ENST00000583713 70 ntBASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 AL020997.2-201ENST00000602607 184 ntBASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 AL391358.1-201ENST00000605342 190 ntBASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 U2.21-201ENST00000637295 81 ntBASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 OR9K1P-202ENST00000641111 3217 ntBASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 MAPK10-263ENST00000641052 4307 ntBASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 RNU6-1289P-201ENST00000384431 106 ntBASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 MIR329-1-201ENST00000385028 80 ntBASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 RNA5SP113-201ENST00000410486 84 ntBASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 RNU6-1001P-201ENST00000411265 100 ntBASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 COX6B1P7-201ENST00000430845 235 ntBASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 AL512844.2-201ENST00000433990 593 ntBASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 SNORD2.1-201ENST00000458762 69 ntBASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 AP001025.1-201ENST00000486139 332 ntBASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 KRTAP5-14P-201ENST00000502328 121 ntBASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 AC091874.1-201ENST00000511402 339 ntBASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 RNA5SP43-201ENST00000516559 110 ntBASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 SCARNA20.4-201ENST00000516969 131 ntBASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 RNU6-58P-201ENST00000517143 103 ntBASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 MRPS18CP4-201ENST00000535821 231 ntBASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 MIR3144-201ENST00000579460 79 ntBASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 MIR7853-201ENST00000584820 132 ntBASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 AC244107.2-201ENST00000611773 76 ntBASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 AC112200.1-201ENST00000625015 234 ntBASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
LIMD1Q9UGP4 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 NOL8P1-201ENST00000508336 3529 ntBASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 AC008725.1-201ENST00000605123 2263 ntBASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 RNA5SP197-201ENST00000363357 119 ntBASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 RNU6-1141P-201ENST00000364520 107 ntBASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 Y_RNA.331-201ENST00000365267 102 ntBASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 GPM6BP3-201ENST00000442797 145 ntBASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 RNA5SP54-201ENST00000516951 92 ntBASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 IGKV1-32-201ENST00000519290 311 ntBASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 CYCSP23-201ENST00000519781 313 ntBASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 AC005176.2-201ENST00000596933 147 ntBASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 MIR6134-201ENST00000617606 109 ntBASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 MESTIT1_1.1-201ENST00000618871 140 ntBASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 AC006206.1-201ENST00000544842 3387 ntBASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms