Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
USP42Q9H9J4 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.94□□□□□ -2.1
USP42Q9H9J4 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.94□□□□□ -2.1
USP42Q9H9J4 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC1.94□□□□□ -2.1
USP42Q9H9J4 AL138976.2-201ENST00000563989 694 ntBASIC1.94□□□□□ -2.1
USP42Q9H9J4 MIR4765-201ENST00000585007 77 ntBASIC1.94□□□□□ -2.1
USP42Q9H9J4 BBIP1P1-201ENST00000602999 279 ntBASIC1.94□□□□□ -2.1
USP42Q9H9J4 AC008121.1-201ENST00000603244 268 ntBASIC1.94□□□□□ -2.1
USP42Q9H9J4 AL139344.1-201ENST00000605228 195 ntBASIC1.94□□□□□ -2.1
USP42Q9H9J4 AC107214.2-201ENST00000608204 634 ntBASIC1.94□□□□□ -2.1
USP42Q9H9J4 AC069294.1-201ENST00000608397 350 ntBASIC1.94□□□□□ -2.1
USP42Q9H9J4 AC010975.3-201ENST00000618727 978 ntBASIC1.94□□□□□ -2.1
USP42Q9H9J4 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC1.94□□□□□ -2.1
USP42Q9H9J4 MIR7157-201ENST00000635801 60 ntBASIC1.94□□□□□ -2.1
USP42Q9H9J4 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC1.94□□□□□ -2.1
USP42Q9H9J4 RNU6-97P-201ENST00000363387 104 ntBASIC1.93□□□□□ -2.1
USP42Q9H9J4 RNU6-468P-201ENST00000384003 109 ntBASIC1.93□□□□□ -2.1
USP42Q9H9J4 RNY1P14-201ENST00000384426 108 ntBASIC1.93□□□□□ -2.1
USP42Q9H9J4 RPL22P22-201ENST00000395439 379 ntBASIC1.93□□□□□ -2.1
USP42Q9H9J4 AL603865.2-201ENST00000401679 213 ntBASIC1.93□□□□□ -2.1
USP42Q9H9J4 TXNP7-201ENST00000406296 293 ntBASIC1.93□□□□□ -2.1
USP42Q9H9J4 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.93□□□□□ -2.1
USP42Q9H9J4 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC1.93□□□□□ -2.1
USP42Q9H9J4 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC1.93□□□□□ -2.1
USP42Q9H9J4 AL160314.1-201ENST00000490836 438 ntBASIC1.93□□□□□ -2.1
USP42Q9H9J4 AC093281.2-201ENST00000510153 597 ntBASIC1.93□□□□□ -2.1
USP42Q9H9J4 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.93□□□□□ -2.1
USP42Q9H9J4 LIAS-206ENST00000513731 826 ntTSL 5 BASIC1.93□□□□□ -2.1
USP42Q9H9J4 MIR892C-201ENST00000516410 77 ntBASIC1.93□□□□□ -2.1
USP42Q9H9J4 RNA5SP102-201ENST00000516865 106 ntBASIC1.93□□□□□ -2.1
USP42Q9H9J4 RNU6-714P-201ENST00000516963 103 ntBASIC1.93□□□□□ -2.1
USP42Q9H9J4 MTCO3P15-201ENST00000526563 574 ntBASIC1.93□□□□□ -2.1
USP42Q9H9J4 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC1.93□□□□□ -2.1
USP42Q9H9J4 AC007349.4-201ENST00000608114 532 ntBASIC1.93□□□□□ -2.1
USP42Q9H9J4 AC009090.3-201ENST00000616553 565 ntBASIC1.93□□□□□ -2.1
USP42Q9H9J4 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC1.93□□□□□ -2.1
USP42Q9H9J4 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
USP42Q9H9J4 AL359851.1-201ENST00000569460 4997 ntBASIC1.93□□□□□ -2.1
USP42Q9H9J4 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC1.92□□□□□ -2.1
USP42Q9H9J4 RNU6-53P-201ENST00000365367 106 ntBASIC1.92□□□□□ -2.1
USP42Q9H9J4 RNU6-609P-201ENST00000365459 107 ntBASIC1.92□□□□□ -2.1
USP42Q9H9J4 RNU6-1122P-201ENST00000384449 107 ntBASIC1.92□□□□□ -2.1
USP42Q9H9J4 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC1.92□□□□□ -2.1
USP42Q9H9J4 FABP5P14-201ENST00000437273 393 ntBASIC1.92□□□□□ -2.1
USP42Q9H9J4 AC079776.3-201ENST00000450665 370 ntBASIC1.92□□□□□ -2.1
USP42Q9H9J4 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC1.92□□□□□ -2.1
USP42Q9H9J4 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC1.92□□□□□ -2.1
USP42Q9H9J4 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC1.92□□□□□ -2.1
USP42Q9H9J4 RPS27AP10-201ENST00000496103 208 ntBASIC1.92□□□□□ -2.1
USP42Q9H9J4 AC027338.1-201ENST00000514840 825 ntBASIC1.92□□□□□ -2.1
USP42Q9H9J4 RNU1-92P-201ENST00000517017 135 ntBASIC1.92□□□□□ -2.1
USP42Q9H9J4 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC1.92□□□□□ -2.1
USP42Q9H9J4 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC1.92□□□□□ -2.1
USP42Q9H9J4 AP005435.4-201ENST00000529514 284 ntBASIC1.92□□□□□ -2.1
USP42Q9H9J4 CBX3P7-201ENST00000532876 502 ntBASIC1.92□□□□□ -2.1
USP42Q9H9J4 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC1.92□□□□□ -2.1
USP42Q9H9J4 CYCSP26-201ENST00000534107 320 ntBASIC1.92□□□□□ -2.1
USP42Q9H9J4 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC1.92□□□□□ -2.1
USP42Q9H9J4 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC1.92□□□□□ -2.1
USP42Q9H9J4 AC004805.2-201ENST00000605382 482 ntBASIC1.92□□□□□ -2.1
USP42Q9H9J4 AL589743.7-201ENST00000612637 233 ntBASIC1.92□□□□□ -2.1
USP42Q9H9J4 AL157834.3-201ENST00000615543 103 ntBASIC1.92□□□□□ -2.1
USP42Q9H9J4 AC019226.1-201ENST00000625666 515 ntBASIC1.92□□□□□ -2.1
USP42Q9H9J4 CDR1-202ENST00000625883 1485 ntBASIC1.92□□□□□ -2.1
USP42Q9H9J4 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
USP42Q9H9J4 RNU4-51P-201ENST00000364206 140 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 RPL7P27-201ENST00000403775 720 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 RNU6-516P-201ENST00000411381 104 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 AL451054.2-201ENST00000420896 202 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 AC092634.2-201ENST00000428146 1010 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC1.91□□□□□ -2.1
USP42Q9H9J4 AC093106.2-201ENST00000428212 385 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 RPL30P4-201ENST00000429309 333 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
USP42Q9H9J4 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC1.91□□□□□ -2.1
USP42Q9H9J4 GPM6BP3-201ENST00000442797 145 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC1.91□□□□□ -2.1
USP42Q9H9J4 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
USP42Q9H9J4 HMGN1P7-201ENST00000491722 313 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC1.91□□□□□ -2.1
USP42Q9H9J4 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC1.91□□□□□ -2.1
USP42Q9H9J4 RNU6-390P-201ENST00000516259 103 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC1.91□□□□□ -2.1
USP42Q9H9J4 OR5AQ1P-201ENST00000527596 927 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.91□□□□□ -2.1
USP42Q9H9J4 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC1.91□□□□□ -2.1
USP42Q9H9J4 AL359212.1-201ENST00000556608 614 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 AL133241.1-201ENST00000556832 487 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.91□□□□□ -2.1
USP42Q9H9J4 MIR3167-201ENST00000579623 85 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 AC007229.1-201ENST00000590455 412 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 AC005261.5-201ENST00000596280 355 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 AL357094.1-201ENST00000603845 844 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC1.91□□□□□ -2.1
USP42Q9H9J4 AL359740.1-201ENST00000624340 592 ntBASIC1.91□□□□□ -2.1
USP42Q9H9J4 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
USP42Q9H9J4 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
USP42Q9H9J4 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 118.7 ms