Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 RPL7P12-201ENST00000446719 750 ntBASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 AC013267.1-201ENST00000458227 267 ntBASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 RNU6-953P-201ENST00000459154 107 ntBASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 KLF3P2-201ENST00000465138 268 ntBASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 RN7SL636P-201ENST00000497504 294 ntBASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 RNU6-1282P-201ENST00000516735 96 ntBASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 RN7SKP258-201ENST00000517151 304 ntBASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 AC004223.2-201ENST00000590309 544 ntBASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 AC064872.1-201ENST00000604823 1072 ntBASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 AC098614.4-201ENST00000607601 462 ntBASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.11□□□□□ -1.91
ZNF541Q9H0D2 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 AC108206.1-201ENST00000570186 4159 ntBASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 Y_RNA.245-201ENST00000364493 95 ntBASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 RNU5E-6P-201ENST00000365574 115 ntBASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 Y_RNA.436-201ENST00000384097 102 ntBASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 SAR1AP2-201ENST00000392696 594 ntBASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 RNA5SP38-201ENST00000410750 119 ntBASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 CDK8P2-201ENST00000415020 547 ntBASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 AC009961.2-201ENST00000435771 251 ntBASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 DDX3P2-201ENST00000446138 111 ntBASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 MTND1P29-201ENST00000448112 647 ntBASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 AC093899.1-201ENST00000457984 376 ntBASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 AC079140.3-201ENST00000511111 550 ntBASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 MTND3P5-201ENST00000512798 333 ntBASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 RNU6-927P-201ENST00000516199 100 ntBASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 RNU6-928P-201ENST00000516876 104 ntBASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 RNU6-1092P-201ENST00000516955 87 ntBASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 AC009063.1-201ENST00000563342 702 ntBASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 MIR3913-1-201ENST00000577744 102 ntBASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 AC005046.1-201ENST00000608515 625 ntBASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 AC010338.1-201ENST00000621823 717 ntBASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 AC073308.1-201ENST00000623696 305 ntBASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 AC092656.1-203ENST00000624134 423 ntBASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
ZNF541Q9H0D2 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 RNU6-511P-201ENST00000363496 107 ntBASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 RNU6-188P-201ENST00000364207 107 ntBASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 RNU6-1077P-201ENST00000410506 102 ntBASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 AL663109.1-201ENST00000411498 844 ntBASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 AC012498.1-201ENST00000424037 437 ntBASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 DPPA2P1-201ENST00000428060 556 ntBASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 AL353706.1-201ENST00000436728 494 ntBASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 AL031183.1-201ENST00000457667 207 ntBASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 snoU13.28-201ENST00000459235 104 ntBASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 AP004217.1-201ENST00000480579 346 ntBASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 AC010493.1-201ENST00000513479 292 ntBASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 AC022447.1-201ENST00000515358 464 ntBASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 SNORA31.1-201ENST00000515993 133 ntBASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 SNORA31.5-201ENST00000516190 133 ntBASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 SNORD59.2-201ENST00000516873 68 ntBASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 TRAV28-201ENST00000557548 323 ntBASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 MIR3167-201ENST00000579623 85 ntBASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 HSPE1P7-201ENST00000604681 321 ntBASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 Z84480.1-201ENST00000605131 311 ntBASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 AL158032.1-201ENST00000605401 106 ntBASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 AC103591.3-201ENST00000608684 209 ntBASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 AC109347.2-201ENST00000610220 349 ntBASIC3.09□□□□□ -1.91
ZNF541Q9H0D2 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.09□□□□□ -1.92
ZNF541Q9H0D2 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.92
ZNF541Q9H0D2 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
ZNF541Q9H0D2 UBE2L2-201ENST00000254302 429 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 HSPE1P11-201ENST00000339579 310 ntBASIC3.08□□□□□ -1.92
ZNF541Q9H0D2 RNU6-512P-201ENST00000364438 103 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms