Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MTND5P17-201ENST00000418405 1603 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC2.7□□□□□ -1.98
NKX3-1Q99801 AC103710.2-202ENST00000641454 2853 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.69□□□□□ -1.98
NKX3-1Q99801 Z83843.1-201ENST00000604070 3685 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 RNU6-483P-201ENST00000384088 108 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 RNU6-217P-201ENST00000384164 104 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 RNU6-606P-201ENST00000384721 111 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.69□□□□□ -1.98
NKX3-1Q99801 AC005326.1-201ENST00000429197 123 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 GPM6BP2-201ENST00000432046 144 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.69□□□□□ -1.98
NKX3-1Q99801 AC244505.4-201ENST00000434905 287 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC2.69□□□□□ -1.98
NKX3-1Q99801 SSXP5-201ENST00000443473 287 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 GPM6BP1-201ENST00000446387 144 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.69□□□□□ -1.98
NKX3-1Q99801 AC010099.1-201ENST00000455434 375 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 AC022364.2-201ENST00000457963 554 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 RNU7-182P-201ENST00000459009 62 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC2.69□□□□□ -1.98
NKX3-1Q99801 RN7SL20P-201ENST00000488827 297 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.69□□□□□ -1.98
NKX3-1Q99801 AC098591.2-201ENST00000510152 315 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC2.69□□□□□ -1.98
NKX3-1Q99801 AC011352.1-201ENST00000512300 793 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 RNA5SP165-201ENST00000517142 115 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.69□□□□□ -1.98
NKX3-1Q99801 AP005435.4-201ENST00000529514 284 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
NKX3-1Q99801 ADI1P3-201ENST00000549509 470 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 AL512360.1-201ENST00000555346 234 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.69□□□□□ -1.98
NKX3-1Q99801 HMGB1P6-201ENST00000569046 646 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 AC068135.2-201ENST00000569293 1028 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 MIR3609-201ENST00000582661 80 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 AC025165.5-201ENST00000602802 578 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 AC174048.1-201ENST00000603389 144 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 BNIP3P9-201ENST00000603714 553 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 AL670379.4-201ENST00000605279 254 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 AL354950.2-201ENST00000617939 290 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 AP003122.6-201ENST00000623831 495 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 AL512643.1-201ENST00000635735 524 ntBASIC2.69□□□□□ -1.98
NKX3-1Q99801 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.69□□□□□ -1.98
NKX3-1Q99801 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
NKX3-1Q99801 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC2.69□□□□□ -1.98
NKX3-1Q99801 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
NKX3-1Q99801 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
NKX3-1Q99801 TPTE2P4-201ENST00000258589 1605 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 HSPA8P4-201ENST00000511877 1920 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
NKX3-1Q99801 RNU6-1085P-201ENST00000363576 107 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.68□□□□□ -1.98
NKX3-1Q99801 RNU6-1035P-201ENST00000384477 107 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 AL139039.1-201ENST00000401900 692 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 AL357075.1-201ENST00000404107 726 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.68□□□□□ -1.98
NKX3-1Q99801 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.68□□□□□ -1.98
NKX3-1Q99801 HSPE1P1-201ENST00000421494 318 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC2.68□□□□□ -1.98
NKX3-1Q99801 AC005300.1-201ENST00000428401 373 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.68□□□□□ -1.98
NKX3-1Q99801 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC2.68□□□□□ -1.98
NKX3-1Q99801 AC000111.3-201ENST00000433478 193 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.68□□□□□ -1.98
NKX3-1Q99801 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC2.68□□□□□ -1.98
NKX3-1Q99801 snoU13.28-201ENST00000459235 104 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 AL121769.1-201ENST00000469473 401 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 RN7SL807P-201ENST00000470923 297 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.68□□□□□ -1.98
NKX3-1Q99801 AC109927.2-201ENST00000506416 303 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 MTCO3P9-201ENST00000506989 781 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 AC117522.3-201ENST00000507974 584 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 RNU6-718P-201ENST00000516166 105 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 SNORA74D-201ENST00000516404 141 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 Y_RNA.693-201ENST00000516641 110 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 RNU6-685P-201ENST00000517088 95 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 RNA5SP291-201ENST00000517222 105 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.68□□□□□ -1.98
NKX3-1Q99801 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
NKX3-1Q99801 AP000867.2-201ENST00000532468 320 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 AP003034.1-201ENST00000534621 422 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC2.68□□□□□ -1.98
NKX3-1Q99801 HMGB1P33-201ENST00000563485 527 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.68□□□□□ -1.98
NKX3-1Q99801 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.68□□□□□ -1.98
NKX3-1Q99801 FTX_3.1-201ENST00000610451 147 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
NKX3-1Q99801 AL138880.2-201ENST00000616214 239 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 AC006111.3-201ENST00000622137 383 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 AC005609.4-201ENST00000625071 447 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.68□□□□□ -1.98
NKX3-1Q99801 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.68□□□□□ -1.98
NKX3-1Q99801 U6.114-201ENST00000636407 96 ntBASIC2.68□□□□□ -1.98
NKX3-1Q99801 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.68□□□□□ -1.98
NKX3-1Q99801 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.68□□□□□ -1.98
NKX3-1Q99801 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.68□□□□□ -1.98
NKX3-1Q99801 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
NKX3-1Q99801 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms