Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.27□□□□□ -1.89
NPAS1Q99742 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.26□□□□□ -1.89
NPAS1Q99742 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
NPAS1Q99742 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.26□□□□□ -1.89
NPAS1Q99742 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
NPAS1Q99742 Y_RNA.72-201ENST00000362894 103 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 RNU6-82P-201ENST00000363970 107 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 RNA5SP42-201ENST00000364278 115 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 RNU6-283P-201ENST00000364788 107 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 Y_RNA.303-201ENST00000364998 94 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 RNU6-217P-201ENST00000384164 104 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 MIR514A2-201ENST00000385131 88 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 MIR514A3-201ENST00000385132 88 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
NPAS1Q99742 AL356057.2-201ENST00000403318 432 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 Y_RNA.604-201ENST00000410574 102 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.26□□□□□ -1.89
NPAS1Q99742 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.26□□□□□ -1.89
NPAS1Q99742 RPL35AP12-201ENST00000425362 338 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 AL158071.1-201ENST00000430315 461 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC3.26□□□□□ -1.89
NPAS1Q99742 RPS3AP46-201ENST00000448352 682 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 AC006539.3-201ENST00000454258 129 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 RNU6-1208P-201ENST00000459588 107 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.26□□□□□ -1.89
NPAS1Q99742 MTND3P25-201ENST00000509243 135 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.26□□□□□ -1.89
NPAS1Q99742 RNU6-572P-201ENST00000516724 80 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.26□□□□□ -1.89
NPAS1Q99742 RPL7P20-201ENST00000520308 745 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC3.26□□□□□ -1.89
NPAS1Q99742 IGHV3-76-201ENST00000522465 295 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 AC243972.3-201ENST00000539655 198 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 AL118558.2-201ENST00000556294 238 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC3.26□□□□□ -1.89
NPAS1Q99742 MIR4738-201ENST00000579134 87 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.26□□□□□ -1.89
NPAS1Q99742 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.26□□□□□ -1.89
NPAS1Q99742 HSPE1P7-201ENST00000604681 321 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 AC006077.1-201ENST00000604746 343 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
NPAS1Q99742 U4.6-201ENST00000621618 127 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 AC022418.1-201ENST00000624118 445 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 AL359693.1-201ENST00000614959 2407 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
NPAS1Q99742 CEP170P1-201ENST00000502249 4587 ntBASIC3.26□□□□□ -1.89
NPAS1Q99742 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
NPAS1Q99742 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.26□□□□□ -1.89
NPAS1Q99742 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
NPAS1Q99742 SRP72P2-201ENST00000344851 1979 ntBASIC3.25□□□□□ -1.89
NPAS1Q99742 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
NPAS1Q99742 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.25□□□□□ -1.89
NPAS1Q99742 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
NPAS1Q99742 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
NPAS1Q99742 FRG1CP-201ENST00000358464 769 ntBASIC3.25□□□□□ -1.89
NPAS1Q99742 Y_RNA.100-201ENST00000363141 102 ntBASIC3.25□□□□□ -1.89
NPAS1Q99742 RNU6-867P-201ENST00000364956 107 ntBASIC3.25□□□□□ -1.89
NPAS1Q99742 RNU6-658P-201ENST00000384606 106 ntBASIC3.25□□□□□ -1.89
NPAS1Q99742 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
NPAS1Q99742 RPL23AP82-202ENST00000427528 469 ntBASIC3.25□□□□□ -1.89
NPAS1Q99742 AL669831.1-202ENST00000428504 417 ntBASIC3.25□□□□□ -1.89
NPAS1Q99742 GTF2IP13-201ENST00000438487 386 ntBASIC3.25□□□□□ -1.89
NPAS1Q99742 PMCHL2-203ENST00000457791 237 ntBASIC3.25□□□□□ -1.89
NPAS1Q99742 RNU7-167P-201ENST00000459160 62 ntBASIC3.25□□□□□ -1.89
NPAS1Q99742 HMGN2P26-201ENST00000463169 339 ntBASIC3.25□□□□□ -1.89
NPAS1Q99742 OARD1-209ENST00000471367 401 ntTSL 2 BASIC3.25□□□□□ -1.89
NPAS1Q99742 RPL32P34-201ENST00000486380 400 ntBASIC3.25□□□□□ -1.89
NPAS1Q99742 AP002812.1-201ENST00000495378 474 ntBASIC3.25□□□□□ -1.89
NPAS1Q99742 HMGN1P11-201ENST00000508668 303 ntBASIC3.25□□□□□ -1.89
NPAS1Q99742 AC008716.1-201ENST00000511084 513 ntBASIC3.25□□□□□ -1.89
NPAS1Q99742 SNORA20.3-201ENST00000516880 132 ntBASIC3.25□□□□□ -1.89
NPAS1Q99742 HMGB1P14-201ENST00000557424 591 ntBASIC3.25□□□□□ -1.89
NPAS1Q99742 VN1R80P-201ENST00000597126 338 ntBASIC3.25□□□□□ -1.89
NPAS1Q99742 AC245389.1-201ENST00000605141 529 ntBASIC3.25□□□□□ -1.89
NPAS1Q99742 MTND4LP5-201ENST00000605152 292 ntBASIC3.25□□□□□ -1.89
NPAS1Q99742 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
NPAS1Q99742 SNORA50A-202ENST00000629536 136 ntBASIC3.25□□□□□ -1.89
NPAS1Q99742 AC009093.8-201ENST00000641769 292 ntBASIC3.25□□□□□ -1.89
NPAS1Q99742 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
NPAS1Q99742 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.25□□□□□ -1.89
NPAS1Q99742 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
NPAS1Q99742 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.25□□□□□ -1.89
NPAS1Q99742 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.25□□□□□ -1.89
NPAS1Q99742 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
NPAS1Q99742 MTND4P12-201ENST00000498999 1377 ntBASIC3.25□□□□□ -1.89
NPAS1Q99742 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.24□□□□□ -1.89
NPAS1Q99742 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
NPAS1Q99742 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
NPAS1Q99742 AC022336.2-201ENST00000568966 2538 ntBASIC3.24□□□□□ -1.89
NPAS1Q99742 AC002546.1-201ENST00000588041 2504 ntBASIC3.24□□□□□ -1.89
NPAS1Q99742 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.24□□□□□ -1.89
NPAS1Q99742 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
NPAS1Q99742 MIR412-201ENST00000362142 91 ntBASIC3.24□□□□□ -1.89
NPAS1Q99742 AL359837.1-201ENST00000381357 287 ntBASIC3.24□□□□□ -1.89
NPAS1Q99742 RNU6-767P-201ENST00000384132 107 ntBASIC3.24□□□□□ -1.89
NPAS1Q99742 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
NPAS1Q99742 PTMAP2-201ENST00000397627 327 ntBASIC3.24□□□□□ -1.89
NPAS1Q99742 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.24□□□□□ -1.89
NPAS1Q99742 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.24□□□□□ -1.89
NPAS1Q99742 AC099548.1-201ENST00000421443 426 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms