Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
NUP88Q99567 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.92□□□□□ -1.78
NUP88Q99567 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
NUP88Q99567 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.92□□□□□ -1.78
NUP88Q99567 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.92□□□□□ -1.78
NUP88Q99567 Y_RNA.86-201ENST00000363020 111 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 Y_RNA.160-201ENST00000363677 92 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 SNORA38.1-201ENST00000364172 131 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 RNU4-20P-201ENST00000365601 151 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 SNORA1.3-201ENST00000384676 136 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
NUP88Q99567 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
NUP88Q99567 SNORD70.1-201ENST00000391007 85 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 RNU6-332P-201ENST00000391193 108 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 AL357075.1-201ENST00000404107 726 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 RNU4-26P-201ENST00000410270 107 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC3.92□□□□□ -1.78
NUP88Q99567 AC009161.1-201ENST00000417306 376 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 RPL30P16-201ENST00000419341 429 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.92□□□□□ -1.78
NUP88Q99567 RPL23AP69-201ENST00000431134 458 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 ERLEC1P1-201ENST00000433806 578 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.92□□□□□ -1.78
NUP88Q99567 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.92□□□□□ -1.78
NUP88Q99567 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC3.92□□□□□ -1.78
NUP88Q99567 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 FABP5P15-201ENST00000453566 214 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 CEACAMP4-201ENST00000457676 421 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 RPL23AP11-201ENST00000475260 469 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 AL135752.1-201ENST00000479477 471 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC3.92□□□□□ -1.78
NUP88Q99567 MTCYBP18-201ENST00000501056 747 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.92□□□□□ -1.78
NUP88Q99567 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.92□□□□□ -1.78
NUP88Q99567 IGKV2-23-201ENST00000518729 323 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.92□□□□□ -1.78
NUP88Q99567 AL157871.3-201ENST00000557231 293 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 AL138976.2-201ENST00000563989 694 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 AC012493.2-201ENST00000595083 291 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.92□□□□□ -1.78
NUP88Q99567 AC136601.2-201ENST00000604356 474 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 BNIP3P10-201ENST00000605360 577 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC3.92□□□□□ -1.78
NUP88Q99567 AC068831.7-201ENST00000616954 363 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 MIR8057-201ENST00000620957 69 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.92□□□□□ -1.78
NUP88Q99567 MFSD8-233ENST00000641482 4860 ntBASIC3.92□□□□□ -1.78
NUP88Q99567 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.92□□□□□ -1.78
NUP88Q99567 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
NUP88Q99567 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.91□□□□□ -1.78
NUP88Q99567 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.91□□□□□ -1.78
NUP88Q99567 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
NUP88Q99567 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
NUP88Q99567 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
NUP88Q99567 RNA5SP374-201ENST00000362939 125 ntBASIC3.91□□□□□ -1.78
NUP88Q99567 Y_RNA.390-201ENST00000383932 102 ntBASIC3.91□□□□□ -1.78
NUP88Q99567 RNU6-38P-201ENST00000384085 107 ntBASIC3.91□□□□□ -1.78
NUP88Q99567 RNU6-393P-201ENST00000384475 107 ntBASIC3.91□□□□□ -1.78
NUP88Q99567 AL356776.1-201ENST00000406574 447 ntBASIC3.91□□□□□ -1.78
NUP88Q99567 RN7SKP111-201ENST00000410349 271 ntBASIC3.91□□□□□ -1.78
NUP88Q99567 RNU6-1025P-201ENST00000410629 104 ntBASIC3.91□□□□□ -1.78
NUP88Q99567 Z92545.1-201ENST00000411782 234 ntBASIC3.91□□□□□ -1.78
NUP88Q99567 EEF1A1P40-201ENST00000412883 573 ntBASIC3.91□□□□□ -1.78
NUP88Q99567 RPL21P90-201ENST00000415692 466 ntBASIC3.91□□□□□ -1.78
NUP88Q99567 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC3.91□□□□□ -1.78
NUP88Q99567 SNRPEP9-201ENST00000436794 238 ntBASIC3.91□□□□□ -1.78
NUP88Q99567 MTCO3P18-201ENST00000440206 761 ntBASIC3.91□□□□□ -1.78
NUP88Q99567 RPS24P13-201ENST00000442520 397 ntBASIC3.91□□□□□ -1.78
NUP88Q99567 SSXP4-201ENST00000451349 245 ntBASIC3.91□□□□□ -1.78
NUP88Q99567 RPL12P25-201ENST00000455592 494 ntBASIC3.91□□□□□ -1.78
NUP88Q99567 RNU6-333P-201ENST00000459117 107 ntBASIC3.91□□□□□ -1.78
NUP88Q99567 RPL21P41-201ENST00000459863 264 ntBASIC3.91□□□□□ -1.78
NUP88Q99567 RPS29P25-201ENST00000481709 171 ntBASIC3.91□□□□□ -1.78
NUP88Q99567 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.91□□□□□ -1.78
NUP88Q99567 AC098799.2-201ENST00000509466 868 ntBASIC3.91□□□□□ -1.78
NUP88Q99567 AC074344.1-201ENST00000512823 224 ntBASIC3.91□□□□□ -1.78
NUP88Q99567 RNU6-928P-201ENST00000516876 104 ntBASIC3.91□□□□□ -1.78
NUP88Q99567 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.91□□□□□ -1.78
NUP88Q99567 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC3.91□□□□□ -1.78
NUP88Q99567 MIR5680-201ENST00000577577 84 ntBASIC3.91□□□□□ -1.78
NUP88Q99567 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.91□□□□□ -1.78
NUP88Q99567 AC093913.1-201ENST00000614178 329 ntBASIC3.91□□□□□ -1.78
NUP88Q99567 AC073308.1-201ENST00000623696 305 ntBASIC3.91□□□□□ -1.78
NUP88Q99567 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.91□□□□□ -1.78
NUP88Q99567 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.91□□□□□ -1.78
NUP88Q99567 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.91□□□□□ -1.78
NUP88Q99567 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
NUP88Q99567 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
NUP88Q99567 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
NUP88Q99567 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
NUP88Q99567 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.9□□□□□ -1.78
NUP88Q99567 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.9□□□□□ -1.78
NUP88Q99567 MTND4P35-201ENST00000604257 1375 ntBASIC3.9□□□□□ -1.78
NUP88Q99567 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
NUP88Q99567 Y_RNA.33-201ENST00000362591 102 ntBASIC3.9□□□□□ -1.79
NUP88Q99567 RNA5SP295-201ENST00000362655 121 ntBASIC3.9□□□□□ -1.79
NUP88Q99567 Y_RNA.157-201ENST00000363638 102 ntBASIC3.9□□□□□ -1.79
NUP88Q99567 Y_RNA.373-201ENST00000365600 103 ntBASIC3.9□□□□□ -1.79
NUP88Q99567 RNU6-1127P-201ENST00000384580 107 ntBASIC3.9□□□□□ -1.79
NUP88Q99567 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 123 ms