Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 Y_RNA.214-201ENST00000364201 112 ntBASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 Y_RNA.461-201ENST00000384263 103 ntBASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 CYP4F29P-201ENST00000420685 446 ntBASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 EIF4EP2-201ENST00000422816 654 ntBASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 TOMM20P4-201ENST00000427861 435 ntBASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 AC007919.1-201ENST00000429380 217 ntBASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 AC087650.1-201ENST00000431445 468 ntBASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 RPL23AP65-201ENST00000475608 468 ntBASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 RPL23AP45-201ENST00000476406 468 ntBASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 RNU6-1143P-201ENST00000516125 104 ntBASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 AC004024.1-201ENST00000549244 247 ntBASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 HMGB1P14-201ENST00000557424 591 ntBASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 AL160290.3-201ENST00000604869 165 ntBASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 AC113403.1-201ENST00000604910 193 ntBASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 AP002826.1-201ENST00000608835 315 ntBASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 AC011944.2-201ENST00000624440 683 ntBASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC4.13□□□□□ -1.75
PTCHD1Q96NR3 AC018529.3-201ENST00000624212 2254 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 RNA5SP307-201ENST00000362863 116 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 Y_RNA.222-201ENST00000364264 102 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 RN7SKP227-201ENST00000364445 330 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 SNORA51.11-201ENST00000384442 131 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 SNORA11F-201ENST00000408237 128 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 RNU6ATAC23P-201ENST00000408448 123 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 MIR1302-6-201ENST00000408466 90 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 MIR1290-201ENST00000408735 78 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 ELOCP20-201ENST00000422460 345 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 RBMY1KP-201ENST00000423480 476 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 RPL27AP8-201ENST00000424277 446 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 C4BPAP2-201ENST00000428434 478 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 AC092423.1-201ENST00000430165 186 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 AL627311.1-201ENST00000431514 115 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 AL132765.1-201ENST00000434165 553 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 AC069285.2-201ENST00000440210 275 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 RN7SL817P-201ENST00000480777 288 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 Vault.1-201ENST00000516474 102 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 AC025755.1-201ENST00000521306 278 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 AC023157.2-201ENST00000540596 141 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 MIR5701-3-201ENST00000578890 82 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 MIR5701-1-201ENST00000585138 82 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 RPL7P50-201ENST00000600588 727 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 RAC1P9-201ENST00000604990 392 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 AL355810.1-201ENST00000614629 552 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 MIR5701-2-201ENST00000615634 82 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 AC090132.2-201ENST00000615881 347 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 SNX18P1Y-201ENST00000616231 511 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 MIR6758-201ENST00000620653 63 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 AC007546.2-201ENST00000623996 360 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 AC233263.6-201ENST00000631132 1963 ntBASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.12□□□□□ -1.75
PTCHD1Q96NR3 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 AC126755.2-208ENST00000327792 462 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 AC138969.1-213ENST00000331436 462 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 RNU6-595P-201ENST00000363944 107 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 RNU4-50P-201ENST00000364361 141 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 RNU6-1181P-201ENST00000384191 106 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 RNU1-44P-201ENST00000384453 163 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 MIR10A-201ENST00000385043 110 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 MIR708-201ENST00000390708 88 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 RNU6-700P-201ENST00000391043 107 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 SAR1AP2-201ENST00000392696 594 ntBASIC4.11□□□□□ -1.75
PTCHD1Q96NR3 RNA5SP239-201ENST00000410218 129 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms