Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 AL355375.2-201ENST00000574825 175 ntBASIC3.14□□□□□ -1.91
CLIP4Q8N3C7 AC005951.2-201ENST00000576282 495 ntBASIC3.14□□□□□ -1.91
CLIP4Q8N3C7 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC3.14□□□□□ -1.91
CLIP4Q8N3C7 AC174048.1-201ENST00000603389 144 ntBASIC3.14□□□□□ -1.91
CLIP4Q8N3C7 DPPA3P3-201ENST00000603842 430 ntBASIC3.14□□□□□ -1.91
CLIP4Q8N3C7 AC104237.2-201ENST00000612456 443 ntBASIC3.14□□□□□ -1.91
CLIP4Q8N3C7 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
CLIP4Q8N3C7 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.14□□□□□ -1.91
CLIP4Q8N3C7 AC009093.8-201ENST00000641769 292 ntBASIC3.14□□□□□ -1.91
CLIP4Q8N3C7 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.14□□□□□ -1.91
CLIP4Q8N3C7 AL672296.1-201ENST00000427780 2158 ntBASIC3.14□□□□□ -1.91
CLIP4Q8N3C7 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.14□□□□□ -1.91
CLIP4Q8N3C7 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
CLIP4Q8N3C7 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CLIP4Q8N3C7 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 AC103710.2-202ENST00000641454 2853 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 RNA5SP197-201ENST00000363357 119 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 RNU6-288P-201ENST00000363690 104 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 Y_RNA.184-201ENST00000363884 108 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 RNU6-173P-201ENST00000364215 104 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 SNORA36C-201ENST00000384289 132 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 Y_RNA.530-201ENST00000384587 101 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 SNORD17-201ENST00000390930 237 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 SNORA48.8-201ENST00000391324 134 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 AL592114.1-201ENST00000403842 483 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 HSPE1P26-201ENST00000405341 275 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 RNU2-37P-201ENST00000410695 177 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 HSPE1P1-201ENST00000421494 318 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 TRIAP1P1-201ENST00000427062 225 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 AC020550.1-201ENST00000447385 163 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 AC008264.1-201ENST00000447612 367 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 RPL23AP67-201ENST00000465341 474 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 RPL7P5-201ENST00000471472 736 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 AC106707.2-201ENST00000484182 374 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 Y_RNA.654-201ENST00000497848 106 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 RNU6-277P-201ENST00000516272 106 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 RNU6-1153P-201ENST00000516760 105 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 RN7SKP258-201ENST00000517151 304 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 IGKV2D-19-201ENST00000523346 262 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 HPRT1P3-201ENST00000539521 576 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 AL138889.2-201ENST00000603883 242 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 CTHRC1P1-201ENST00000605383 469 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 AL442067.2-201ENST00000614033 363 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 AC007742.2-201ENST00000618226 398 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 AL133216.2-202ENST00000634512 349 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 MIR1302-1-201ENST00000637932 143 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 AC008264.2-201ENST00000610193 3731 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 AL133383.2-201ENST00000622958 2336 ntBASIC3.13□□□□□ -1.91
CLIP4Q8N3C7 MTND5P7-201ENST00000413558 1798 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 Y_RNA.67-201ENST00000362870 100 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 RNU6-82P-201ENST00000363970 107 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 U3.12-201ENST00000364498 214 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 FAT1P1-201ENST00000406588 507 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 RN7SKP202-201ENST00000410439 330 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 RNU2-71P-201ENST00000411395 189 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 AC092809.3-201ENST00000415453 231 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 NCOR1P3-201ENST00000420479 303 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 AC073063.1-201ENST00000434352 607 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 AC007389.2-201ENST00000434630 306 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 HMGB3P11-201ENST00000440127 604 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 SNORA19.2-201ENST00000516013 114 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 SNORA31.8-201ENST00000516327 108 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 RNU6-677P-201ENST00000516914 101 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 TRMT10BP1-201ENST00000519377 943 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 AC106782.4-201ENST00000568264 210 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 MIR4506-201ENST00000584693 77 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 BDH2P1-201ENST00000602288 736 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 Z82243.1-201ENST00000609432 473 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 MIR7851-201ENST00000610611 160 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 AL359547.2-201ENST00000615810 418 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 AC090574.1-201ENST00000623186 233 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 MTND1P37-201ENST00000636562 264 ntBASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms