Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MIR6134-201ENST00000617606 109 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 TPTEP1-208ENST00000636884 213 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 Y_RNA.212-201ENST00000364177 102 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 SNORA14A-201ENST00000364773 135 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 RNU6-898P-201ENST00000365627 104 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 RNU6-214P-201ENST00000384130 107 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 RNU6-72P-201ENST00000384285 79 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 MIR659-201ENST00000384963 97 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 MIR518D-201ENST00000385014 87 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 MT-TD-201ENST00000387419 68 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 AL122016.1-201ENST00000403365 367 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 U3.37-201ENST00000408528 213 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 AL096701.2-201ENST00000416920 238 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 AL159987.2-201ENST00000432754 307 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 AC011998.1-201ENST00000433403 117 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 RPL23AP22-201ENST00000437556 453 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 AC009969.1-201ENST00000438726 172 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 HMGN2P10-201ENST00000448085 265 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 AC010326.1-201ENST00000462726 602 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 RPL35AP15-201ENST00000468042 339 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 AL132838.2-201ENST00000492041 314 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 MTCO1P29-201ENST00000496868 288 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 AC113155.1-201ENST00000511141 769 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 RNU6-1332P-201ENST00000516666 104 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 RNU6-273P-201ENST00000516937 96 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 SNORA31.21-201ENST00000517180 77 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 AL451007.1-201ENST00000595491 289 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 AC243960.4-201ENST00000600532 288 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 AC008121.1-201ENST00000603244 268 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 AP000787.2-201ENST00000604432 568 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 AL138726.1-201ENST00000614873 333 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 AL591424.2-201ENST00000617023 128 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 AC008013.2-202ENST00000637965 364 ntBASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.28□□□□□ -1.88
CCDC28AQ8IWP9 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 ADAM3A-203ENST00000461344 2157 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-37P-201ENST00000362692 107 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 Y_RNA.135-201ENST00000363439 95 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-11P-201ENST00000364234 107 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-7-201ENST00000364784 107 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-8-201ENST00000365467 107 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-25P-201ENST00000383873 107 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-1-201ENST00000383898 107 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-48P-201ENST00000384161 107 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-36P-201ENST00000384172 107 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-4P-201ENST00000384205 107 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-5P-201ENST00000384238 107 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-3P-201ENST00000384314 107 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-16P-201ENST00000384385 107 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-15P-201ENST00000384534 107 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-2-201ENST00000384627 107 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-29P-201ENST00000384637 107 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-9-201ENST00000384776 107 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-33P-201ENST00000384793 107 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 RNU6ATAC5P-201ENST00000388104 126 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 RNA5SP397-201ENST00000391323 118 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 AC126124.2-201ENST00000413542 321 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 AC016831.2-201ENST00000417179 352 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 AL590762.4-201ENST00000425885 253 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 AC005300.1-201ENST00000428401 373 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 HMGB1P18-201ENST00000438801 619 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 AMD1P1-201ENST00000457220 922 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 Y_RNA.687-201ENST00000516558 91 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 111.2 ms