Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 NANOGP2-201ENST00000435391 727 ntBASIC0.31□□□□□ -2.36
LINC00643Q86TS7 AC098831.1-201ENST00000440661 216 ntBASIC0.31□□□□□ -2.36
LINC00643Q86TS7 AC244505.3-201ENST00000454598 187 ntBASIC0.31□□□□□ -2.36
LINC00643Q86TS7 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC0.31□□□□□ -2.36
LINC00643Q86TS7 AL049874.1-201ENST00000489560 388 ntBASIC0.31□□□□□ -2.36
LINC00643Q86TS7 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC0.31□□□□□ -2.36
LINC00643Q86TS7 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC0.31□□□□□ -2.36
LINC00643Q86TS7 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC0.31□□□□□ -2.36
LINC00643Q86TS7 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC0.31□□□□□ -2.36
LINC00643Q86TS7 ELOCP5-201ENST00000604924 333 ntBASIC0.31□□□□□ -2.36
LINC00643Q86TS7 AC092953.2-201ENST00000608000 699 ntBASIC0.31□□□□□ -2.36
LINC00643Q86TS7 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC0.31□□□□□ -2.36
LINC00643Q86TS7 AP005229.2-201ENST00000609980 697 ntBASIC0.31□□□□□ -2.36
LINC00643Q86TS7 FTX_3.1-201ENST00000610451 147 ntBASIC0.31□□□□□ -2.36
LINC00643Q86TS7 AC064859.1-201ENST00000624741 174 ntBASIC0.31□□□□□ -2.36
LINC00643Q86TS7 AC110491.1-201ENST00000562191 2010 ntBASIC0.31□□□□□ -2.36
LINC00643Q86TS7 AC092125.1-201ENST00000562568 1995 ntBASIC0.3□□□□□ -2.36
LINC00643Q86TS7 RNU6-414P-201ENST00000363705 104 ntBASIC0.3□□□□□ -2.36
LINC00643Q86TS7 RNU6-140P-201ENST00000384566 108 ntBASIC0.3□□□□□ -2.36
LINC00643Q86TS7 MIR134-201ENST00000385258 73 ntBASIC0.3□□□□□ -2.36
LINC00643Q86TS7 SNORA48.1-201ENST00000390879 135 ntBASIC0.3□□□□□ -2.36
LINC00643Q86TS7 SNORA11.5-201ENST00000408163 128 ntBASIC0.3□□□□□ -2.36
LINC00643Q86TS7 RNU2-43P-201ENST00000410306 190 ntBASIC0.3□□□□□ -2.36
LINC00643Q86TS7 CYCSP33-201ENST00000414485 327 ntBASIC0.3□□□□□ -2.36
LINC00643Q86TS7 RPS26P5-201ENST00000418544 335 ntBASIC0.3□□□□□ -2.36
LINC00643Q86TS7 OFD1P2Y-201ENST00000421895 1149 ntBASIC0.3□□□□□ -2.36
LINC00643Q86TS7 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC0.3□□□□□ -2.36
LINC00643Q86TS7 RPS6P15-201ENST00000431996 751 ntBASIC0.3□□□□□ -2.36
LINC00643Q86TS7 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC0.3□□□□□ -2.36
LINC00643Q86TS7 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC0.3□□□□□ -2.36
LINC00643Q86TS7 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC0.3□□□□□ -2.36
LINC00643Q86TS7 FAM92A1P2-202ENST00000504766 877 ntBASIC0.3□□□□□ -2.36
LINC00643Q86TS7 BOLA3P3-201ENST00000505182 232 ntBASIC0.3□□□□□ -2.36
LINC00643Q86TS7 RNA5SP121-201ENST00000516537 101 ntBASIC0.3□□□□□ -2.36
LINC00643Q86TS7 RNU6-295P-201ENST00000516901 104 ntBASIC0.3□□□□□ -2.36
LINC00643Q86TS7 BNIP3P16-201ENST00000589779 534 ntBASIC0.3□□□□□ -2.36
LINC00643Q86TS7 AC008751.2-201ENST00000597885 980 ntBASIC0.3□□□□□ -2.36
LINC00643Q86TS7 AC112220.3-201ENST00000605502 502 ntBASIC0.3□□□□□ -2.36
LINC00643Q86TS7 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.3□□□□□ -2.36
LINC00643Q86TS7 DLEU1_2.1-201ENST00000617920 342 ntBASIC0.3□□□□□ -2.36
LINC00643Q86TS7 AL138713.1-201ENST00000624026 2130 ntBASIC0.29□□□□□ -2.36
LINC00643Q86TS7 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC0.29□□□□□ -2.36
LINC00643Q86TS7 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC0.29□□□□□ -2.36
LINC00643Q86TS7 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC0.29□□□□□ -2.36
LINC00643Q86TS7 MIR10B-201ENST00000385011 110 ntBASIC0.29□□□□□ -2.36
LINC00643Q86TS7 MIR514A1-201ENST00000385133 98 ntBASIC0.29□□□□□ -2.36
LINC00643Q86TS7 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.29□□□□□ -2.36
LINC00643Q86TS7 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC0.29□□□□□ -2.36
LINC00643Q86TS7 NCOR1P3-201ENST00000420479 303 ntBASIC0.29□□□□□ -2.36
LINC00643Q86TS7 AC245102.2-201ENST00000448956 180 ntBASIC0.29□□□□□ -2.36
LINC00643Q86TS7 FDX1P2-201ENST00000450769 375 ntBASIC0.29□□□□□ -2.36
LINC00643Q86TS7 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC0.29□□□□□ -2.36
LINC00643Q86TS7 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC0.29□□□□□ -2.36
LINC00643Q86TS7 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC0.29□□□□□ -2.36
LINC00643Q86TS7 AP001324.2-201ENST00000461163 319 ntBASIC0.29□□□□□ -2.36
LINC00643Q86TS7 AC068587.1-201ENST00000483613 781 ntBASIC0.29□□□□□ -2.36
LINC00643Q86TS7 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC0.29□□□□□ -2.36
LINC00643Q86TS7 RNU4-54P-201ENST00000516428 129 ntBASIC0.29□□□□□ -2.36
LINC00643Q86TS7 RNU6-667P-201ENST00000517186 102 ntBASIC0.29□□□□□ -2.36
LINC00643Q86TS7 CYCSP23-201ENST00000519781 313 ntBASIC0.29□□□□□ -2.36
LINC00643Q86TS7 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC0.29□□□□□ -2.36
LINC00643Q86TS7 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC0.29□□□□□ -2.36
LINC00643Q86TS7 EIF4BP1-201ENST00000554881 351 ntBASIC0.29□□□□□ -2.36
LINC00643Q86TS7 RPS3AP4-201ENST00000555161 764 ntBASIC0.29□□□□□ -2.36
LINC00643Q86TS7 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.29□□□□□ -2.36
LINC00643Q86TS7 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.29□□□□□ -2.36
LINC00643Q86TS7 AC004775.1-201ENST00000607389 753 ntBASIC0.29□□□□□ -2.36
LINC00643Q86TS7 AC108706.1-201ENST00000611053 297 ntBASIC0.29□□□□□ -2.36
LINC00643Q86TS7 AC096577.2-201ENST00000611455 153 ntBASIC0.29□□□□□ -2.36
LINC00643Q86TS7 AC040896.1-201ENST00000613819 479 ntBASIC0.29□□□□□ -2.36
LINC00643Q86TS7 AL590808.1-201ENST00000618696 141 ntBASIC0.29□□□□□ -2.36
LINC00643Q86TS7 GMFB-210ENST00000628554 639 ntTSL 4 BASIC0.29□□□□□ -2.36
LINC00643Q86TS7 MIR3199-2-201ENST00000636243 86 ntBASIC0.29□□□□□ -2.36
LINC00643Q86TS7 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC0.29□□□□□ -2.36
LINC00643Q86TS7 Z75746.1-201ENST00000440243 2080 ntBASIC0.29□□□□□ -2.36
LINC00643Q86TS7 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC0.29□□□□□ -2.36
LINC00643Q86TS7 SNORA7.1-201ENST00000363750 139 ntBASIC0.28□□□□□ -2.36
LINC00643Q86TS7 SNORD18A-201ENST00000363753 72 ntBASIC0.28□□□□□ -2.36
LINC00643Q86TS7 RNU6-741P-201ENST00000383889 107 ntBASIC0.28□□□□□ -2.36
LINC00643Q86TS7 SNORD51-201ENST00000384320 80 ntBASIC0.28□□□□□ -2.36
LINC00643Q86TS7 MIR135A2-201ENST00000384854 100 ntBASIC0.28□□□□□ -2.36
LINC00643Q86TS7 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.28□□□□□ -2.36
LINC00643Q86TS7 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC0.28□□□□□ -2.36
LINC00643Q86TS7 AC004941.2-201ENST00000427009 228 ntBASIC0.28□□□□□ -2.36
LINC00643Q86TS7 HMGB1P27-201ENST00000431429 603 ntBASIC0.28□□□□□ -2.36
LINC00643Q86TS7 THAP5P1-201ENST00000439089 262 ntBASIC0.28□□□□□ -2.36
LINC00643Q86TS7 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC0.28□□□□□ -2.36
LINC00643Q86TS7 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC0.28□□□□□ -2.36
LINC00643Q86TS7 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC0.28□□□□□ -2.36
LINC00643Q86TS7 RN7SKP210-201ENST00000459176 261 ntBASIC0.28□□□□□ -2.36
LINC00643Q86TS7 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC0.28□□□□□ -2.36
LINC00643Q86TS7 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC0.28□□□□□ -2.36
LINC00643Q86TS7 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.28□□□□□ -2.36
LINC00643Q86TS7 AC005261.5-201ENST00000596280 355 ntBASIC0.28□□□□□ -2.36
LINC00643Q86TS7 BNIP3P23-201ENST00000599655 511 ntBASIC0.28□□□□□ -2.36
LINC00643Q86TS7 HMGB1P51-201ENST00000605166 638 ntBASIC0.28□□□□□ -2.36
LINC00643Q86TS7 AL160281.1-201ENST00000605307 311 ntBASIC0.28□□□□□ -2.36
LINC00643Q86TS7 AL022345.1-201ENST00000607292 135 ntBASIC0.28□□□□□ -2.36
LINC00643Q86TS7 MIR6078-201ENST00000611069 100 ntBASIC0.28□□□□□ -2.36
LINC00643Q86TS7 MIR6835-201ENST00000621552 64 ntBASIC0.28□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms