Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 RN7SKP167-201ENST00000411047 285 ntBASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 AL139156.1-201ENST00000412785 841 ntBASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 AL078601.1-201ENST00000444542 271 ntBASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 RPL23AP24-201ENST00000458203 385 ntBASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 AC010469.2-201ENST00000496412 480 ntBASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 RNU6-1256P-201ENST00000516539 103 ntBASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 DEFB108E-201ENST00000524692 240 ntBASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 AC023575.1-201ENST00000580510 358 ntBASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 AC140113.4-201ENST00000622087 222 ntBASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 U4.7-201ENST00000638126 106 ntBASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 RNU4-9P-201ENST00000364951 139 ntBASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 Y_RNA.405-201ENST00000383979 100 ntBASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 RNU6-746P-201ENST00000384112 109 ntBASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 Y_RNA.451-201ENST00000384200 100 ntBASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 Y_RNA.464-201ENST00000384282 110 ntBASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 Y_RNA.524-201ENST00000384564 100 ntBASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 Y_RNA.561-201ENST00000384694 100 ntBASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 MIR215-201ENST00000384858 110 ntBASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 MIR195-201ENST00000385194 87 ntBASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 SNORD78.2-201ENST00000391076 69 ntBASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 SDHCP2-201ENST00000398565 501 ntBASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 AL590139.1-201ENST00000416267 400 ntBASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 MTCO3P29-201ENST00000432119 779 ntBASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 RPL23AP22-201ENST00000437556 453 ntBASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 AL772161.1-201ENST00000439130 476 ntBASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 KRTAP5-14P-201ENST00000502328 121 ntBASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 AC004024.1-201ENST00000549244 247 ntBASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 MED28P6-201ENST00000558776 231 ntBASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 AC090617.3-201ENST00000573670 475 ntBASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 MIR4443-201ENST00000585052 53 ntBASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 RPL7P50-201ENST00000600588 727 ntBASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 BPIFA4P-203ENST00000603168 689 ntBASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
UBE3DQ7Z6J8 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 RNU6-1266P-201ENST00000362794 105 ntBASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 Y_RNA.274-201ENST00000364714 101 ntBASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 RNA5SP505-201ENST00000364748 108 ntBASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 RNU6-662P-201ENST00000384253 104 ntBASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 RNU6-886P-201ENST00000384319 105 ntBASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 RPEP3-201ENST00000425462 676 ntBASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 AC098614.2-201ENST00000426040 255 ntBASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 ANP32BP2-201ENST00000454525 545 ntBASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 AC010265.1-201ENST00000513509 211 ntBASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 AC136932.1-201ENST00000574771 208 ntBASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 AC010900.2-201ENST00000604508 210 ntBASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 MIR6891-201ENST00000618788 93 ntBASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 AL450472.1-202ENST00000637286 180 ntBASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.29□□□□□ -1.72
UBE3DQ7Z6J8 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.28□□□□□ -1.72
UBE3DQ7Z6J8 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 191.6 ms