Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 AC008269.2-201ENST00000561915 1105 ntBASIC3.18□□□□□ -1.9
USP43Q70EL4 AC087499.8-201ENST00000578406 226 ntBASIC3.18□□□□□ -1.9
USP43Q70EL4 MIR3146-201ENST00000580367 79 ntBASIC3.18□□□□□ -1.9
USP43Q70EL4 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.18□□□□□ -1.9
USP43Q70EL4 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC3.18□□□□□ -1.9
USP43Q70EL4 AC006077.1-201ENST00000604746 343 ntBASIC3.18□□□□□ -1.9
USP43Q70EL4 Z84480.1-201ENST00000605131 311 ntBASIC3.18□□□□□ -1.9
USP43Q70EL4 AC096577.2-201ENST00000611455 153 ntBASIC3.18□□□□□ -1.9
USP43Q70EL4 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.18□□□□□ -1.9
USP43Q70EL4 AC244517.12-201ENST00000623581 663 ntBASIC3.18□□□□□ -1.9
USP43Q70EL4 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.18□□□□□ -1.9
USP43Q70EL4 AP000553.6-201ENST00000641242 118 ntBASIC3.18□□□□□ -1.9
USP43Q70EL4 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.18□□□□□ -1.9
USP43Q70EL4 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.18□□□□□ -1.9
USP43Q70EL4 OR4G1P-203ENST00000641984 1631 ntBASIC3.18□□□□□ -1.9
USP43Q70EL4 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
USP43Q70EL4 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
USP43Q70EL4 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
USP43Q70EL4 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
USP43Q70EL4 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.17□□□□□ -1.9
USP43Q70EL4 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.17□□□□□ -1.9
USP43Q70EL4 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
USP43Q70EL4 RNU1-35P-201ENST00000362782 153 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 Y_RNA.187-201ENST00000363918 113 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 Y_RNA.234-201ENST00000364409 97 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 Y_RNA.255-201ENST00000364581 97 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 RNU6-702P-201ENST00000364982 107 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 Y_RNA.307-201ENST00000365022 117 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 RNU6-606P-201ENST00000384721 111 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 AL359634.1-202ENST00000404721 284 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 RNU6-1304P-201ENST00000411374 106 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 RPS12P24-201ENST00000412619 387 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 HSPE1P1-201ENST00000421494 318 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.17□□□□□ -1.9
USP43Q70EL4 AC091390.3-201ENST00000426478 338 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 AL591419.1-201ENST00000427423 339 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 CKS1BP5-201ENST00000434172 273 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.17□□□□□ -1.9
USP43Q70EL4 AC108734.1-201ENST00000439549 399 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 AC079781.2-201ENST00000446424 169 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 GAPDHP27-201ENST00000447427 1020 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 PPP1R2P5-201ENST00000457256 603 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.17□□□□□ -1.9
USP43Q70EL4 U8.20-201ENST00000459445 131 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 RPL21P104-201ENST00000464143 478 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC3.17□□□□□ -1.9
USP43Q70EL4 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.17□□□□□ -1.9
USP43Q70EL4 AC093303.1-201ENST00000514549 295 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 SMURF2P1-201ENST00000514992 481 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 RNU6-406P-201ENST00000516470 107 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 RN7SKP277-201ENST00000516895 283 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 AC107934.2-201ENST00000518653 310 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 AC245166.1-201ENST00000521012 253 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 AP000889.1-201ENST00000530968 660 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.17□□□□□ -1.9
USP43Q70EL4 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC3.17□□□□□ -1.9
USP43Q70EL4 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.17□□□□□ -1.9
USP43Q70EL4 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.17□□□□□ -1.9
USP43Q70EL4 MIR5187-201ENST00000583479 76 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.17□□□□□ -1.9
USP43Q70EL4 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.17□□□□□ -1.9
USP43Q70EL4 U3.45-201ENST00000607547 219 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.17□□□□□ -1.9
USP43Q70EL4 AL596245.1-201ENST00000618994 362 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 SAGE4P-201ENST00000442271 3381 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
USP43Q70EL4 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
USP43Q70EL4 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
USP43Q70EL4 AC032011.1-201ENST00000611703 1549 ntBASIC3.17□□□□□ -1.9
USP43Q70EL4 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.17□□□□□ -1.9
USP43Q70EL4 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
USP43Q70EL4 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.16□□□□□ -1.9
USP43Q70EL4 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
USP43Q70EL4 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.16□□□□□ -1.9
USP43Q70EL4 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
USP43Q70EL4 AC073343.1-201ENST00000328239 651 ntBASIC3.16□□□□□ -1.9
USP43Q70EL4 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
USP43Q70EL4 RNY1P12-201ENST00000364251 105 ntBASIC3.16□□□□□ -1.9
USP43Q70EL4 RNU6-1207P-201ENST00000384343 107 ntBASIC3.16□□□□□ -1.9
USP43Q70EL4 Y_RNA.476-201ENST00000384347 108 ntBASIC3.16□□□□□ -1.9
USP43Q70EL4 U8.11-201ENST00000384699 133 ntBASIC3.16□□□□□ -1.9
USP43Q70EL4 U8.12-201ENST00000384701 133 ntBASIC3.16□□□□□ -1.9
USP43Q70EL4 MIR491-201ENST00000384877 84 ntBASIC3.16□□□□□ -1.9
USP43Q70EL4 MIR514A2-201ENST00000385131 88 ntBASIC3.16□□□□□ -1.9
USP43Q70EL4 MIR514A3-201ENST00000385132 88 ntBASIC3.16□□□□□ -1.9
USP43Q70EL4 CISD1P1-201ENST00000393907 327 ntBASIC3.16□□□□□ -1.9
USP43Q70EL4 AL591416.1-201ENST00000404015 867 ntBASIC3.16□□□□□ -1.9
USP43Q70EL4 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.16□□□□□ -1.9
USP43Q70EL4 SYF2P2-201ENST00000417620 583 ntBASIC3.16□□□□□ -1.9
USP43Q70EL4 AL451054.2-201ENST00000420896 202 ntBASIC3.16□□□□□ -1.9
USP43Q70EL4 AL669831.1-202ENST00000428504 417 ntBASIC3.16□□□□□ -1.9
USP43Q70EL4 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.16□□□□□ -1.9
USP43Q70EL4 HMGB1P12-201ENST00000438594 598 ntBASIC3.16□□□□□ -1.9
USP43Q70EL4 AL590399.6-201ENST00000446396 307 ntBASIC3.16□□□□□ -1.9
USP43Q70EL4 RPL21P23-201ENST00000446654 460 ntBASIC3.16□□□□□ -1.9
USP43Q70EL4 BX276092.4-201ENST00000452056 248 ntBASIC3.16□□□□□ -1.9
USP43Q70EL4 HMGB1P15-201ENST00000453854 435 ntBASIC3.16□□□□□ -1.9
USP43Q70EL4 RNU7-63P-201ENST00000459054 62 ntBASIC3.16□□□□□ -1.9
USP43Q70EL4 U8.18-201ENST00000459285 133 ntBASIC3.16□□□□□ -1.9
USP43Q70EL4 AP001992.1-205ENST00000462248 379 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms