Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 CABYRP1-201ENST00000465493 1045 ntBASIC0.22□□□□□ -2.37
VPS13CQ709C8 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC0.22□□□□□ -2.37
VPS13CQ709C8 AC021146.2-201ENST00000504736 556 ntBASIC0.22□□□□□ -2.37
VPS13CQ709C8 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC0.22□□□□□ -2.37
VPS13CQ709C8 AC008834.1-201ENST00000511612 175 ntBASIC0.22□□□□□ -2.37
VPS13CQ709C8 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC0.22□□□□□ -2.37
VPS13CQ709C8 AC012676.2-201ENST00000619258 186 ntBASIC0.22□□□□□ -2.37
VPS13CQ709C8 AC145207.9-201ENST00000623802 325 ntBASIC0.22□□□□□ -2.37
VPS13CQ709C8 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC0.22□□□□□ -2.37
VPS13CQ709C8 MIR100-201ENST00000385259 80 ntBASIC0.22□□□□□ -2.37
VPS13CQ709C8 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC0.22□□□□□ -2.37
VPS13CQ709C8 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC0.22□□□□□ -2.37
VPS13CQ709C8 CYCSP2-201ENST00000558168 301 ntBASIC0.22□□□□□ -2.37
VPS13CQ709C8 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC0.22□□□□□ -2.37
VPS13CQ709C8 MIR4422-201ENST00000581938 83 ntBASIC0.22□□□□□ -2.37
VPS13CQ709C8 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC0.22□□□□□ -2.37
VPS13CQ709C8 SNORA51.2-201ENST00000364595 132 ntBASIC0.21□□□□□ -2.38
VPS13CQ709C8 AC023141.4-201ENST00000412031 328 ntBASIC0.21□□□□□ -2.38
VPS13CQ709C8 MTND4LP12-201ENST00000448237 295 ntBASIC0.21□□□□□ -2.38
VPS13CQ709C8 CLIC4P1-201ENST00000453177 535 ntBASIC0.21□□□□□ -2.38
VPS13CQ709C8 AC087477.1-201ENST00000465747 340 ntBASIC0.21□□□□□ -2.38
VPS13CQ709C8 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC0.21□□□□□ -2.38
VPS13CQ709C8 SNX3P1X-201ENST00000414887 175 ntBASIC0.21□□□□□ -2.38
VPS13CQ709C8 AL035410.1-201ENST00000427409 427 ntBASIC0.21□□□□□ -2.38
VPS13CQ709C8 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC0.21□□□□□ -2.38
VPS13CQ709C8 AC023824.2-201ENST00000566185 400 ntBASIC0.21□□□□□ -2.38
VPS13CQ709C8 MIR548AX-201ENST00000580117 73 ntBASIC0.21□□□□□ -2.38
VPS13CQ709C8 RNY4P24-201ENST00000362735 96 ntBASIC0.21□□□□□ -2.38
VPS13CQ709C8 DYNLT3P2-201ENST00000442517 295 ntBASIC0.21□□□□□ -2.38
VPS13CQ709C8 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC0.21□□□□□ -2.38
VPS13CQ709C8 AC078857.1-201ENST00000469870 667 ntBASIC0.21□□□□□ -2.38
VPS13CQ709C8 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC0.21□□□□□ -2.38
VPS13CQ709C8 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC0.21□□□□□ -2.38
VPS13CQ709C8 SMARCE1P4-201ENST00000523647 241 ntBASIC0.21□□□□□ -2.38
VPS13CQ709C8 FAM60BP-201ENST00000578364 658 ntBASIC0.21□□□□□ -2.38
VPS13CQ709C8 AC018618.2-201ENST00000604770 446 ntBASIC0.21□□□□□ -2.38
VPS13CQ709C8 AC009318.3-201ENST00000616916 503 ntBASIC0.21□□□□□ -2.38
VPS13CQ709C8 AK6-205ENST00000618980 483 ntTSL 2 BASIC0.21□□□□□ -2.38
VPS13CQ709C8 MTND4P16-201ENST00000466108 1367 ntBASIC0.2□□□□□ -2.38
VPS13CQ709C8 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.2□□□□□ -2.38
VPS13CQ709C8 SNORA25.8-201ENST00000364831 128 ntBASIC0.2□□□□□ -2.38
VPS13CQ709C8 U8.7-201ENST00000364940 136 ntBASIC0.2□□□□□ -2.38
VPS13CQ709C8 Y_RNA.476-201ENST00000384347 108 ntBASIC0.2□□□□□ -2.38
VPS13CQ709C8 SFR1P2-201ENST00000421841 730 ntBASIC0.2□□□□□ -2.38
VPS13CQ709C8 RPL37P21-201ENST00000435890 276 ntBASIC0.2□□□□□ -2.38
VPS13CQ709C8 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC0.2□□□□□ -2.38
VPS13CQ709C8 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.2□□□□□ -2.38
VPS13CQ709C8 AC008739.2-201ENST00000597006 317 ntBASIC0.2□□□□□ -2.38
VPS13CQ709C8 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC0.2□□□□□ -2.38
VPS13CQ709C8 DLEU1_2.1-201ENST00000617920 342 ntBASIC0.2□□□□□ -2.38
VPS13CQ709C8 AC087821.2-201ENST00000637086 450 ntBASIC0.2□□□□□ -2.38
VPS13CQ709C8 HSPE1P21-201ENST00000438283 308 ntBASIC0.2□□□□□ -2.38
VPS13CQ709C8 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.2□□□□□ -2.38
VPS13CQ709C8 RPL23AP3-201ENST00000453844 468 ntBASIC0.2□□□□□ -2.38
VPS13CQ709C8 AC138853.1-201ENST00000503549 823 ntBASIC0.2□□□□□ -2.38
VPS13CQ709C8 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC0.2□□□□□ -2.38
VPS13CQ709C8 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC0.2□□□□□ -2.38
VPS13CQ709C8 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC0.2□□□□□ -2.38
VPS13CQ709C8 RSL24D1P11-201ENST00000591045 491 ntBASIC0.2□□□□□ -2.38
VPS13CQ709C8 MIR6130-201ENST00000619419 109 ntBASIC0.2□□□□□ -2.38
VPS13CQ709C8 U3.8-201ENST00000363675 217 ntBASIC0.2□□□□□ -2.38
VPS13CQ709C8 SNORA3A-201ENST00000364113 130 ntBASIC0.2□□□□□ -2.38
VPS13CQ709C8 SNORA50A-201ENST00000384225 134 ntBASIC0.2□□□□□ -2.38
VPS13CQ709C8 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC0.2□□□□□ -2.38
VPS13CQ709C8 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.2□□□□□ -2.38
VPS13CQ709C8 AC002545.1-201ENST00000592511 181 ntBASIC0.2□□□□□ -2.38
VPS13CQ709C8 HSBP1P2-201ENST00000299671 229 ntBASIC0.19□□□□□ -2.38
VPS13CQ709C8 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.19□□□□□ -2.38
VPS13CQ709C8 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC0.19□□□□□ -2.38
VPS13CQ709C8 RPEP5-201ENST00000441137 268 ntBASIC0.19□□□□□ -2.38
VPS13CQ709C8 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC0.19□□□□□ -2.38
VPS13CQ709C8 TPTE2P6-202ENST00000445572 1007 ntBASIC0.19□□□□□ -2.38
VPS13CQ709C8 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC0.19□□□□□ -2.38
VPS13CQ709C8 AC133963.2-201ENST00000513686 578 ntBASIC0.19□□□□□ -2.38
VPS13CQ709C8 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC0.19□□□□□ -2.38
VPS13CQ709C8 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC0.19□□□□□ -2.38
VPS13CQ709C8 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC0.19□□□□□ -2.38
VPS13CQ709C8 AC106800.4-201ENST00000614905 153 ntBASIC0.19□□□□□ -2.38
VPS13CQ709C8 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.19□□□□□ -2.38
VPS13CQ709C8 MIR618-201ENST00000385287 98 ntBASIC0.19□□□□□ -2.38
VPS13CQ709C8 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC0.19□□□□□ -2.38
VPS13CQ709C8 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.19□□□□□ -2.38
VPS13CQ709C8 SNORA44.1-201ENST00000517031 108 ntBASIC0.19□□□□□ -2.38
VPS13CQ709C8 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC0.19□□□□□ -2.38
VPS13CQ709C8 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC0.19□□□□□ -2.38
VPS13CQ709C8 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC0.19□□□□□ -2.38
VPS13CQ709C8 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC0.19□□□□□ -2.38
VPS13CQ709C8 RNA5SP108-201ENST00000605921 117 ntBASIC0.19□□□□□ -2.38
VPS13CQ709C8 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.19□□□□□ -2.38
VPS13CQ709C8 RPL22P13-201ENST00000493291 347 ntBASIC0.19□□□□□ -2.38
VPS13CQ709C8 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC0.19□□□□□ -2.38
VPS13CQ709C8 MIR4645-201ENST00000583158 77 ntBASIC0.19□□□□□ -2.38
VPS13CQ709C8 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC0.19□□□□□ -2.38
VPS13CQ709C8 U4.2-201ENST00000618561 85 ntBASIC0.19□□□□□ -2.38
VPS13CQ709C8 ZNF519P1-201ENST00000449011 1626 ntBASIC0.19□□□□□ -2.38
VPS13CQ709C8 ZNF33CP-201ENST00000432492 2030 ntBASIC0.19□□□□□ -2.38
VPS13CQ709C8 RNU6-1184P-201ENST00000384588 108 ntBASIC0.18□□□□□ -2.38
VPS13CQ709C8 PIGPP2-201ENST00000411569 458 ntBASIC0.18□□□□□ -2.38
VPS13CQ709C8 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC0.18□□□□□ -2.38
VPS13CQ709C8 snoU109.1-201ENST00000459339 135 ntBASIC0.18□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms