Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC2.58□□□□□ -2
CCDC40Q4G0X9 TRIM60P10Y-201ENST00000425589 751 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 MTCYBP39-201ENST00000437562 491 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC2.58□□□□□ -2
CCDC40Q4G0X9 MTND4P25-201ENST00000441039 533 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 SNORD97-201ENST00000459187 142 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 AC068587.2-201ENST00000478386 781 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 RPL39P36-201ENST00000490784 156 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.58□□□□□ -2
CCDC40Q4G0X9 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.58□□□□□ -2
CCDC40Q4G0X9 RNU4-29P-201ENST00000515943 174 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 SNORA3.4-201ENST00000515969 96 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 BTF3P12-201ENST00000519620 469 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.58□□□□□ -2
CCDC40Q4G0X9 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC2.58□□□□□ -2
CCDC40Q4G0X9 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC2.58□□□□□ -2
CCDC40Q4G0X9 AC022022.2-201ENST00000602989 360 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 AC121334.2-201ENST00000605387 271 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 MIR6895-201ENST00000613497 78 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 AC011939.3-201ENST00000613686 466 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 AL449363.1-201ENST00000617815 186 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 AC006338.1-201ENST00000618453 749 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 AL589994.2-201ENST00000621124 579 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 AC091953.2-201ENST00000623979 160 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 SCARNA15.3-201ENST00000626315 122 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 SCARNA4.1-201ENST00000628597 123 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 AC093591.3-201ENST00000634516 308 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
CCDC40Q4G0X9 RNU6-501P-201ENST00000364072 100 ntBASIC2.57□□□□□ -2
CCDC40Q4G0X9 SMIM11P1-201ENST00000369586 178 ntBASIC2.57□□□□□ -2
CCDC40Q4G0X9 RNU1-52P-201ENST00000384190 164 ntBASIC2.57□□□□□ -2
CCDC40Q4G0X9 RNU6-220P-201ENST00000390919 107 ntBASIC2.57□□□□□ -2
CCDC40Q4G0X9 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.57□□□□□ -2
CCDC40Q4G0X9 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.57□□□□□ -2
CCDC40Q4G0X9 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.57□□□□□ -2
CCDC40Q4G0X9 AL593851.1-201ENST00000426171 157 ntBASIC2.57□□□□□ -2
CCDC40Q4G0X9 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC2.57□□□□□ -2
CCDC40Q4G0X9 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.57□□□□□ -2
CCDC40Q4G0X9 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC2.57□□□□□ -2
CCDC40Q4G0X9 AC026801.1-201ENST00000497178 464 ntBASIC2.57□□□□□ -2
CCDC40Q4G0X9 AC234781.5-201ENST00000508429 271 ntBASIC2.57□□□□□ -2
CCDC40Q4G0X9 AC023141.11-201ENST00000508864 202 ntBASIC2.57□□□□□ -2
CCDC40Q4G0X9 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.57□□□□□ -2
CCDC40Q4G0X9 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC2.57□□□□□ -2
CCDC40Q4G0X9 SNORD19.2-201ENST00000516978 73 ntBASIC2.57□□□□□ -2
CCDC40Q4G0X9 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.57□□□□□ -2
CCDC40Q4G0X9 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.57□□□□□ -2
CCDC40Q4G0X9 MTND1P24-201ENST00000552175 861 ntBASIC2.57□□□□□ -2
CCDC40Q4G0X9 AC027176.1-201ENST00000560204 514 ntBASIC2.57□□□□□ -2
CCDC40Q4G0X9 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.57□□□□□ -2
CCDC40Q4G0X9 PCMTD1P2-201ENST00000565017 355 ntBASIC2.57□□□□□ -2
CCDC40Q4G0X9 AC105137.2-201ENST00000569073 466 ntBASIC2.57□□□□□ -2
CCDC40Q4G0X9 MIR3118-1-201ENST00000581787 76 ntBASIC2.57□□□□□ -2
CCDC40Q4G0X9 AC103810.6-201ENST00000606708 136 ntBASIC2.57□□□□□ -2
CCDC40Q4G0X9 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.57□□□□□ -2
CCDC40Q4G0X9 AC006927.3-201ENST00000638789 384 ntBASIC2.57□□□□□ -2
CCDC40Q4G0X9 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.57□□□□□ -2
CCDC40Q4G0X9 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.57□□□□□ -2
CCDC40Q4G0X9 AL445523.1-201ENST00000451184 1362 ntBASIC2.57□□□□□ -2
CCDC40Q4G0X9 AC016717.2-201ENST00000609089 5141 ntBASIC2.57□□□□□ -2
CCDC40Q4G0X9 AC007336.1-201ENST00000576365 3828 ntBASIC2.57□□□□□ -2
CCDC40Q4G0X9 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC40Q4G0X9 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC40Q4G0X9 RNU6-533P-201ENST00000384144 107 ntBASIC2.56□□□□□ -2
CCDC40Q4G0X9 RPS4XP8-201ENST00000402039 771 ntBASIC2.56□□□□□ -2
CCDC40Q4G0X9 RPS12P24-201ENST00000412619 387 ntBASIC2.56□□□□□ -2
CCDC40Q4G0X9 MTND2P9-201ENST00000422293 931 ntBASIC2.56□□□□□ -2
CCDC40Q4G0X9 AC011233.1-201ENST00000422812 283 ntBASIC2.56□□□□□ -2
CCDC40Q4G0X9 AC093106.2-201ENST00000428212 385 ntBASIC2.56□□□□□ -2
CCDC40Q4G0X9 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC2.56□□□□□ -2
CCDC40Q4G0X9 AL365184.2-201ENST00000431139 435 ntBASIC2.56□□□□□ -2
CCDC40Q4G0X9 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC2.56□□□□□ -2
CCDC40Q4G0X9 AL161651.1-201ENST00000440882 223 ntBASIC2.56□□□□□ -2
CCDC40Q4G0X9 AL139109.1-201ENST00000455491 297 ntBASIC2.56□□□□□ -2
CCDC40Q4G0X9 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC2.56□□□□□ -2
CCDC40Q4G0X9 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.56□□□□□ -2
CCDC40Q4G0X9 AC126389.1-201ENST00000477436 290 ntBASIC2.56□□□□□ -2
CCDC40Q4G0X9 MTND1P3-201ENST00000484956 952 ntBASIC2.56□□□□□ -2
CCDC40Q4G0X9 AC112204.1-201ENST00000502591 103 ntBASIC2.56□□□□□ -2
CCDC40Q4G0X9 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.56□□□□□ -2
CCDC40Q4G0X9 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC2.56□□□□□ -2
CCDC40Q4G0X9 BNIP3P9-201ENST00000603714 553 ntBASIC2.56□□□□□ -2
CCDC40Q4G0X9 MTCYBP22-201ENST00000603788 447 ntBASIC2.56□□□□□ -2
CCDC40Q4G0X9 AC104763.2-201ENST00000604179 382 ntBASIC2.56□□□□□ -2
CCDC40Q4G0X9 AC091152.3-201ENST00000604227 325 ntBASIC2.56□□□□□ -2
CCDC40Q4G0X9 AC005332.10-201ENST00000612725 619 ntBASIC2.56□□□□□ -2
CCDC40Q4G0X9 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.56□□□□□ -2
CCDC40Q4G0X9 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.56□□□□□ -2
CCDC40Q4G0X9 MTND4P35-201ENST00000604257 1375 ntBASIC2.56□□□□□ -2
CCDC40Q4G0X9 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC40Q4G0X9 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC40Q4G0X9 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.55□□□□□ -2
CCDC40Q4G0X9 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CCDC40Q4G0X9 RNU5F-6P-201ENST00000362979 116 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 RNU5E-6P-201ENST00000365574 115 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.55□□□□□ -2
CCDC40Q4G0X9 SNORD115.1-201ENST00000391109 76 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 FCF1P10-201ENST00000407590 479 ntBASIC2.55□□□□□ -2
CCDC40Q4G0X9 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.55□□□□□ -2
CCDC40Q4G0X9 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms