| CRY2 | Q49AN0 | HSPE1P11-201 | ENST00000339579 | 310 nt | BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | RNU5E-1-201 | ENST00000362477 | 120 nt | BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | MIR181B1-201 | ENST00000385240 | 110 nt | BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | RNU6-817P-201 | ENST00000391083 | 104 nt | BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | RPL23AP32-201 | ENST00000395315 | 459 nt | BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AL079342.1-201 | ENST00000401460 | 267 nt | BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | TANK-204 | ENST00000403609 | 555 nt | TSL 1 (best) BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AL590004.2-201 | ENST00000404787 | 371 nt | BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | RNU6ATAC40P-201 | ENST00000408580 | 137 nt | BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | EDNRB-AS1-201 | ENST00000422405 | 601 nt | TSL 5 BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AC093106.2-201 | ENST00000428212 | 385 nt | BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | RPS12P2-201 | ENST00000439728 | 269 nt | BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AC092620.2-201 | ENST00000458007 | 744 nt | TSL 2 BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | RPL23AP45-201 | ENST00000476406 | 468 nt | BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | RPL39P36-201 | ENST00000490784 | 156 nt | BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | PLCXD2-AS1-201 | ENST00000493131 | 491 nt | TSL 3 BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | NCRNA00250-201 | ENST00000519500 | 519 nt | TSL 4 BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | HMGB1P41-201 | ENST00000520234 | 440 nt | BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AP003465.1-201 | ENST00000520575 | 382 nt | TSL 2 BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AC012378.1-201 | ENST00000561155 | 364 nt | TSL 3 BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | DUXAP4-201 | ENST00000603046 | 613 nt | BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | Z94722.1-201 | ENST00000604328 | 474 nt | BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AC103858.1-201 | ENST00000607019 | 476 nt | TSL 3 BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AC046143.2-201 | ENST00000609789 | 160 nt | BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | PTP4A2-219 | ENST00000626355 | 606 nt | TSL 5 BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | EYS-204 | ENST00000370621 | 10485 nt | APPRIS ALT2 TSL 1 (best) BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AC093725.1-201 | ENST00000508135 | 2672 nt | TSL 5 BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AC099654.7-201 | ENST00000635788 | 2127 nt | BASIC | 3.04 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | LPP-221 | ENST00000618621 | 18277 nt | TSL 1 (best) BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | LPP-222 | ENST00000640853 | 18277 nt | APPRIS P1 TSL 1 (best) BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | CCDC82-202 | ENST00000423339 | 1878 nt | APPRIS P2 TSL 1 (best) BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | KNTC1-205 | ENST00000450485 | 3655 nt | TSL 2 BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | ANKRD18EP-201 | ENST00000405487 | 2632 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AC073343.1-201 | ENST00000328239 | 651 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | FGF7P2-201 | ENST00000332473 | 296 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | RNU6-960P-201 | ENST00000364056 | 120 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | RNU4-91P-201 | ENST00000364778 | 135 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | RNU1-73P-201 | ENST00000383971 | 164 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | RNU6-14P-201 | ENST00000384630 | 106 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | RNU4-26P-201 | ENST00000410270 | 107 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AC007064.1-201 | ENST00000412238 | 351 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AC009518.2-201 | ENST00000418056 | 731 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | ATG3P1-201 | ENST00000419507 | 911 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AC016710.1-201 | ENST00000421326 | 466 nt | TSL 3 BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AL365496.1-201 | ENST00000426885 | 215 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | MTND6P13-201 | ENST00000443510 | 523 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AL353705.4-201 | ENST00000449661 | 238 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AC116666.1-201 | ENST00000453915 | 551 nt | TSL 5 BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AC093899.1-201 | ENST00000457984 | 376 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | SUMO2P6-201 | ENST00000505273 | 288 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AC091965.2-201 | ENST00000512324 | 613 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | RNU6-677P-201 | ENST00000516914 | 101 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | RNU2-46P-201 | ENST00000517038 | 113 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AC103957.1-202 | ENST00000519814 | 735 nt | TSL 3 BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AC060765.1-201 | ENST00000522776 | 544 nt | TSL 4 BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AP002453.2-201 | ENST00000533503 | 320 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | VBP1-203 | ENST00000535916 | 944 nt | TSL 2 BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | LINC02309-201 | ENST00000553679 | 207 nt | TSL 3 BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | EGLN3-AS1-201 | ENST00000555922 | 308 nt | TSL 3 BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | LINC02328-203 | ENST00000557195 | 682 nt | TSL 3 BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AC005498.1-201 | ENST00000592125 | 465 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AC012254.1-201 | ENST00000592747 | 200 nt | TSL 3 BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AL355877.2-201 | ENST00000603670 | 358 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | UBE2Q2P2-203 | ENST00000613592 | 761 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AC026523.1-201 | ENST00000617221 | 490 nt | TSL 5 BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AL603839.4-201 | ENST00000624658 | 1005 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AC110994.2-201 | ENST00000635481 | 492 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | AL137003.2-201 | ENST00000606924 | 2538 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CRY2 | Q49AN0 | MTND5P6-201 | ENST00000422338 | 1798 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | ZBTB8OSP1-201 | ENST00000342688 | 498 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | RNU6-188P-201 | ENST00000364207 | 107 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | SMIM11P1-201 | ENST00000369586 | 178 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | MIR1289-2-201 | ENST00000408360 | 111 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | NT5C3A-205 | ENST00000409467 | 1032 nt | APPRIS ALT1 TSL 5 BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | RPS12P24-201 | ENST00000412619 | 387 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | AL355388.1-201 | ENST00000415726 | 401 nt | TSL 2 BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | AL513477.1-202 | ENST00000417061 | 214 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | DPH3P2-201 | ENST00000422618 | 250 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | HTR2A-AS1-201 | ENST00000430913 | 429 nt | TSL 3 BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | AC098826.1-201 | ENST00000433943 | 471 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | AL080284.1-201 | ENST00000434493 | 442 nt | TSL 2 BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | RPL23AP58-201 | ENST00000440453 | 469 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | MRPL50P4-201 | ENST00000446432 | 475 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | AC009961.3-201 | ENST00000449832 | 765 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | SATB1-AS1-204 | ENST00000453361 | 726 nt | TSL 3 BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | AL109763.1-201 | ENST00000455391 | 461 nt | TSL 2 BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | AC126182.1-201 | ENST00000478134 | 357 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | RPS29P20-201 | ENST00000489592 | 171 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | AC092436.1-201 | ENST00000506450 | 503 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | AC004053.1-201 | ENST00000515127 | 575 nt | TSL 5 BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | AC068880.3-201 | ENST00000519185 | 179 nt | TSL 5 BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | ASPH-224 | ENST00000522603 | 842 nt | TSL 1 (best) BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | AC087463.1-201 | ENST00000568541 | 556 nt | TSL 2 BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | AC005771.1-201 | ENST00000585581 | 349 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | TCF4-AS2-201 | ENST00000586467 | 445 nt | TSL 2 BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | AC008739.2-201 | ENST00000597006 | 317 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | RPL23AP78-201 | ENST00000599928 | 470 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | AL365204.3-201 | ENST00000612448 | 685 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | AC008162.2-201 | ENST00000613352 | 291 nt | APPRIS P1 TSL 3 BASIC | 3.02 | □□□□□ -1.93 | | |
| CRY2 | Q49AN0 | AP001506.1-201 | ENST00000615444 | 211 nt | BASIC | 3.02 | □□□□□ -1.93 | | |