Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC0.65□□□□□ -2.3
CHD9Q3L8U1 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC0.65□□□□□ -2.3
CHD9Q3L8U1 RNU6-1249P-201ENST00000363237 111 ntBASIC0.65□□□□□ -2.31
CHD9Q3L8U1 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC0.65□□□□□ -2.31
CHD9Q3L8U1 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC0.65□□□□□ -2.31
CHD9Q3L8U1 RPL30P13-201ENST00000418873 348 ntBASIC0.65□□□□□ -2.31
CHD9Q3L8U1 Z95118.1-201ENST00000421372 247 ntBASIC0.65□□□□□ -2.31
CHD9Q3L8U1 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC0.65□□□□□ -2.31
CHD9Q3L8U1 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC0.65□□□□□ -2.31
CHD9Q3L8U1 AC118273.2-201ENST00000532092 465 ntBASIC0.65□□□□□ -2.31
CHD9Q3L8U1 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC0.65□□□□□ -2.31
CHD9Q3L8U1 MIR6759-201ENST00000638110 65 ntBASIC0.65□□□□□ -2.31
CHD9Q3L8U1 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC0.65□□□□□ -2.31
CHD9Q3L8U1 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC0.65□□□□□ -2.31
CHD9Q3L8U1 U3.13-201ENST00000364804 214 ntBASIC0.65□□□□□ -2.31
CHD9Q3L8U1 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC0.65□□□□□ -2.31
CHD9Q3L8U1 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC0.65□□□□□ -2.31
CHD9Q3L8U1 RNU6-730P-201ENST00000383954 104 ntBASIC0.65□□□□□ -2.31
CHD9Q3L8U1 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC0.65□□□□□ -2.31
CHD9Q3L8U1 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC0.65□□□□□ -2.31
CHD9Q3L8U1 FAM206BP-201ENST00000510179 541 ntBASIC0.65□□□□□ -2.31
CHD9Q3L8U1 SNORA70.16-201ENST00000516390 95 ntBASIC0.65□□□□□ -2.31
CHD9Q3L8U1 SNORA31.13-201ENST00000516624 135 ntBASIC0.65□□□□□ -2.31
CHD9Q3L8U1 SUB1P1-201ENST00000524415 382 ntBASIC0.65□□□□□ -2.31
CHD9Q3L8U1 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC0.65□□□□□ -2.31
CHD9Q3L8U1 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC0.65□□□□□ -2.31
CHD9Q3L8U1 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC0.65□□□□□ -2.31
CHD9Q3L8U1 AP001269.3-201ENST00000588718 329 ntBASIC0.65□□□□□ -2.31
CHD9Q3L8U1 AC078899.2-201ENST00000595282 212 ntBASIC0.65□□□□□ -2.31
CHD9Q3L8U1 AP001330.4-201ENST00000604350 154 ntBASIC0.65□□□□□ -2.31
CHD9Q3L8U1 AC013468.1-201ENST00000608680 598 ntBASIC0.65□□□□□ -2.31
CHD9Q3L8U1 UCA1.1-201ENST00000620952 75 ntBASIC0.65□□□□□ -2.31
CHD9Q3L8U1 AC027309.3-201ENST00000623419 351 ntBASIC0.65□□□□□ -2.31
CHD9Q3L8U1 MIR7157-201ENST00000635801 60 ntBASIC0.65□□□□□ -2.31
CHD9Q3L8U1 MIR6866-201ENST00000638146 69 ntBASIC0.65□□□□□ -2.31
CHD9Q3L8U1 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC0.65□□□□□ -2.31
CHD9Q3L8U1 RNU6-386P-201ENST00000362650 107 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 SNORD26-201ENST00000384147 75 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 Y_RNA.571-201ENST00000384753 98 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC0.64□□□□□ -2.31
CHD9Q3L8U1 SNORD56-201ENST00000413522 71 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC0.64□□□□□ -2.31
CHD9Q3L8U1 SEPT2P1-201ENST00000419651 180 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 AL161651.1-201ENST00000440882 223 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC0.64□□□□□ -2.31
CHD9Q3L8U1 AC026801.1-201ENST00000497178 464 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC0.64□□□□□ -2.31
CHD9Q3L8U1 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC0.64□□□□□ -2.31
CHD9Q3L8U1 MIR892C-201ENST00000516410 77 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 RNU2-19P-201ENST00000517288 84 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 AC067904.2-201ENST00000517322 1283 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 AC022880.1-201ENST00000534017 973 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 CYCSP26-201ENST00000534107 320 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 MIR4765-201ENST00000585007 77 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC0.64□□□□□ -2.31
CHD9Q3L8U1 AL021997.1-201ENST00000605757 193 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 AC103710.4-201ENST00000609301 899 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 AC117490.2-201ENST00000610042 594 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC0.64□□□□□ -2.31
CHD9Q3L8U1 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
CHD9Q3L8U1 Y_RNA.324-201ENST00000365165 102 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 AC068050.1-201ENST00000394891 380 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 MIR1912-201ENST00000410389 80 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC0.64□□□□□ -2.31
CHD9Q3L8U1 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC0.64□□□□□ -2.31
CHD9Q3L8U1 AC097499.1-201ENST00000444277 208 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 RPS20P24-201ENST00000457473 361 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 KLRA1P-201ENST00000503499 986 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 BOLA3P3-201ENST00000505182 232 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC0.64□□□□□ -2.31
CHD9Q3L8U1 AC104057.1-201ENST00000515547 497 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 SNORA31.25-201ENST00000517242 134 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 OR5B19P-201ENST00000531766 928 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC0.64□□□□□ -2.31
CHD9Q3L8U1 AL133241.1-201ENST00000556832 487 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 MIR4504-201ENST00000577413 92 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 AC079791.1-201ENST00000605356 973 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 AC135507.1-201ENST00000607214 561 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 AC135803.1-201ENST00000608748 565 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 SDR42E1P2-201ENST00000614861 481 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 SDR42E1P4-201ENST00000620894 481 ntBASIC0.64□□□□□ -2.31
CHD9Q3L8U1 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 HMGB3P17-201ENST00000504195 649 ntBASIC0.63□□□□□ -2.31
CHD9Q3L8U1 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 LSM6P2-201ENST00000552208 177 ntBASIC0.63□□□□□ -2.31
CHD9Q3L8U1 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 AL442644.1-201ENST00000454390 3105 ntBASIC0.63□□□□□ -2.31
CHD9Q3L8U1 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 SNORA2A-201ENST00000383885 135 ntBASIC0.63□□□□□ -2.31
CHD9Q3L8U1 RPS27P26-201ENST00000494583 239 ntBASIC0.63□□□□□ -2.31
CHD9Q3L8U1 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC0.63□□□□□ -2.31
CHD9Q3L8U1 AC008494.2-201ENST00000514544 370 ntBASIC0.63□□□□□ -2.31
CHD9Q3L8U1 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC0.63□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms