Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
RNF4P78317 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
RNF4P78317 AC139713.2-215ENST00000641428 5037 ntBASIC4.22□□□□□ -1.73
RNF4P78317 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
RNF4P78317 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC4.21□□□□□ -1.74
RNF4P78317 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.21□□□□□ -1.74
RNF4P78317 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
RNF4P78317 Y_RNA.14-201ENST00000362415 103 ntBASIC4.21□□□□□ -1.74
RNF4P78317 Y_RNA.105-201ENST00000363182 111 ntBASIC4.21□□□□□ -1.74
RNF4P78317 RNA5SP513-201ENST00000364648 118 ntBASIC4.21□□□□□ -1.74
RNF4P78317 MIR659-201ENST00000384963 97 ntBASIC4.21□□□□□ -1.74
RNF4P78317 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
RNF4P78317 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
RNF4P78317 RNU2-68P-201ENST00000410878 191 ntBASIC4.21□□□□□ -1.74
RNF4P78317 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.21□□□□□ -1.74
RNF4P78317 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC4.21□□□□□ -1.74
RNF4P78317 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.21□□□□□ -1.74
RNF4P78317 AL590383.1-201ENST00000428602 75 ntBASIC4.21□□□□□ -1.74
RNF4P78317 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.21□□□□□ -1.74
RNF4P78317 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC4.21□□□□□ -1.74
RNF4P78317 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC4.21□□□□□ -1.74
RNF4P78317 FCF1P4-201ENST00000448326 183 ntBASIC4.21□□□□□ -1.74
RNF4P78317 AC079354.2-201ENST00000453523 154 ntBASIC4.21□□□□□ -1.74
RNF4P78317 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC4.21□□□□□ -1.74
RNF4P78317 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.21□□□□□ -1.74
RNF4P78317 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC4.21□□□□□ -1.74
RNF4P78317 MTND1P19-201ENST00000511780 315 ntBASIC4.21□□□□□ -1.74
RNF4P78317 AC109479.2-201ENST00000517842 174 ntBASIC4.21□□□□□ -1.74
RNF4P78317 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC4.21□□□□□ -1.74
RNF4P78317 DLEU2_2.2-201ENST00000615474 90 ntBASIC4.21□□□□□ -1.74
RNF4P78317 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC4.21□□□□□ -1.74
RNF4P78317 MIR7641-1-201ENST00000627518 61 ntBASIC4.21□□□□□ -1.74
RNF4P78317 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.21□□□□□ -1.74
RNF4P78317 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
RNF4P78317 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
RNF4P78317 RAD17P1-201ENST00000418130 2042 ntBASIC4.21□□□□□ -1.74
RNF4P78317 AP000560.1-201ENST00000624150 1937 ntBASIC4.21□□□□□ -1.74
RNF4P78317 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.21□□□□□ -1.74
RNF4P78317 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.2□□□□□ -1.74
RNF4P78317 AC006971.1-201ENST00000407916 4486 ntBASIC4.2□□□□□ -1.74
RNF4P78317 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.2□□□□□ -1.74
RNF4P78317 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
RNF4P78317 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
RNF4P78317 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
RNF4P78317 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.2□□□□□ -1.74
RNF4P78317 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.2□□□□□ -1.74
RNF4P78317 RNA5SP443-201ENST00000363083 132 ntBASIC4.2□□□□□ -1.74
RNF4P78317 RNU1-32P-201ENST00000363937 159 ntBASIC4.2□□□□□ -1.74
RNF4P78317 RNU5E-7P-201ENST00000365290 117 ntBASIC4.2□□□□□ -1.74
RNF4P78317 RN7SKP216-201ENST00000411050 312 ntBASIC4.2□□□□□ -1.74
RNF4P78317 RNU6-130P-201ENST00000411112 103 ntBASIC4.2□□□□□ -1.74
RNF4P78317 RPEP5-201ENST00000441137 268 ntBASIC4.2□□□□□ -1.74
RNF4P78317 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.2□□□□□ -1.74
RNF4P78317 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.2□□□□□ -1.74
RNF4P78317 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC4.2□□□□□ -1.74
RNF4P78317 AC104164.2-201ENST00000496953 495 ntBASIC4.2□□□□□ -1.74
RNF4P78317 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC4.2□□□□□ -1.74
RNF4P78317 RNU6-377P-201ENST00000515965 102 ntBASIC4.2□□□□□ -1.74
RNF4P78317 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.2□□□□□ -1.74
RNF4P78317 AC034114.1-201ENST00000520293 285 ntBASIC4.2□□□□□ -1.74
RNF4P78317 AP003733.2-201ENST00000529409 171 ntBASIC4.2□□□□□ -1.74
RNF4P78317 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.2□□□□□ -1.74
RNF4P78317 TRAV28-201ENST00000557548 323 ntBASIC4.2□□□□□ -1.74
RNF4P78317 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4.2□□□□□ -1.74
RNF4P78317 MIR5096-201ENST00000583713 70 ntBASIC4.2□□□□□ -1.74
RNF4P78317 AL139395.1-201ENST00000603662 160 ntBASIC4.2□□□□□ -1.74
RNF4P78317 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.2□□□□□ -1.74
RNF4P78317 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.2□□□□□ -1.74
RNF4P78317 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.2□□□□□ -1.74
RNF4P78317 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
RNF4P78317 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.2□□□□□ -1.74
RNF4P78317 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.2□□□□□ -1.74
RNF4P78317 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
RNF4P78317 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
RNF4P78317 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
RNF4P78317 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.19□□□□□ -1.74
RNF4P78317 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC4.19□□□□□ -1.74
RNF4P78317 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
RNF4P78317 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
RNF4P78317 CPHL1P-201ENST00000461341 3407 ntBASIC4.19□□□□□ -1.74
RNF4P78317 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.19□□□□□ -1.74
RNF4P78317 MIR448-201ENST00000362131 111 ntBASIC4.19□□□□□ -1.74
RNF4P78317 Y_RNA.123-201ENST00000363338 102 ntBASIC4.19□□□□□ -1.74
RNF4P78317 RNU6-336P-201ENST00000364891 107 ntBASIC4.19□□□□□ -1.74
RNF4P78317 MIR325-201ENST00000385260 98 ntBASIC4.19□□□□□ -1.74
RNF4P78317 Y_RNA.625-201ENST00000411256 107 ntBASIC4.19□□□□□ -1.74
RNF4P78317 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC4.19□□□□□ -1.74
RNF4P78317 FAR2P2-201ENST00000413041 594 ntBASIC4.19□□□□□ -1.74
RNF4P78317 RPL21P38-201ENST00000418090 167 ntBASIC4.19□□□□□ -1.74
RNF4P78317 RPL7AP25-201ENST00000423357 805 ntBASIC4.19□□□□□ -1.74
RNF4P78317 Z74021.1-201ENST00000423610 407 ntBASIC4.19□□□□□ -1.74
RNF4P78317 AL358472.1-201ENST00000431295 329 ntBASIC4.19□□□□□ -1.74
RNF4P78317 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.19□□□□□ -1.74
RNF4P78317 AC013470.1-201ENST00000453438 462 ntBASIC4.19□□□□□ -1.74
RNF4P78317 LINC01399-202ENST00000458450 244 ntBASIC4.19□□□□□ -1.74
RNF4P78317 RPS29P27-201ENST00000463711 170 ntBASIC4.19□□□□□ -1.74
RNF4P78317 RPL30P10-201ENST00000488148 337 ntBASIC4.19□□□□□ -1.74
RNF4P78317 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
RNF4P78317 RAB9BP1-201ENST00000519581 626 ntBASIC4.19□□□□□ -1.74
RNF4P78317 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 155.1 ms