Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC3.42□□□□□ -1.86
CTCFP49711 RNU6-1282P-201ENST00000516735 96 ntBASIC3.42□□□□□ -1.86
CTCFP49711 RNU6-1092P-201ENST00000516955 87 ntBASIC3.42□□□□□ -1.86
CTCFP49711 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CTCFP49711 AC090572.1-201ENST00000519251 160 ntBASIC3.42□□□□□ -1.86
CTCFP49711 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.42□□□□□ -1.86
CTCFP49711 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
CTCFP49711 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC3.42□□□□□ -1.86
CTCFP49711 AC087883.1-201ENST00000551882 391 ntBASIC3.42□□□□□ -1.86
CTCFP49711 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC3.42□□□□□ -1.86
CTCFP49711 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.42□□□□□ -1.86
CTCFP49711 AC002545.1-201ENST00000592511 181 ntBASIC3.42□□□□□ -1.86
CTCFP49711 NDUFA8P1-201ENST00000605525 367 ntBASIC3.42□□□□□ -1.86
CTCFP49711 AL161734.1-201ENST00000609720 557 ntBASIC3.42□□□□□ -1.86
CTCFP49711 AC046143.2-201ENST00000609789 160 ntBASIC3.42□□□□□ -1.86
CTCFP49711 AC104073.3-201ENST00000610942 955 ntBASIC3.42□□□□□ -1.86
CTCFP49711 Z99129.1-201ENST00000612510 255 ntBASIC3.42□□□□□ -1.86
CTCFP49711 AC072046.2-201ENST00000618366 268 ntBASIC3.42□□□□□ -1.86
CTCFP49711 AC092608.2-201ENST00000624427 218 ntBASIC3.42□□□□□ -1.86
CTCFP49711 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
CTCFP49711 AC007785.2-201ENST00000598627 1916 ntBASIC3.41□□□□□ -1.86
CTCFP49711 Y_RNA.22-201ENST00000362492 102 ntBASIC3.41□□□□□ -1.86
CTCFP49711 RNU6-799P-201ENST00000363567 107 ntBASIC3.41□□□□□ -1.86
CTCFP49711 SMIM11P1-201ENST00000369586 178 ntBASIC3.41□□□□□ -1.86
CTCFP49711 CD24P4-201ENST00000382840 243 ntBASIC3.41□□□□□ -1.86
CTCFP49711 RNU6-741P-201ENST00000383889 107 ntBASIC3.41□□□□□ -1.86
CTCFP49711 RNU6-14P-201ENST00000384630 106 ntBASIC3.41□□□□□ -1.86
CTCFP49711 RNU2-33P-201ENST00000410344 192 ntBASIC3.41□□□□□ -1.86
CTCFP49711 RNU2-66P-201ENST00000410650 161 ntBASIC3.41□□□□□ -1.86
CTCFP49711 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC3.41□□□□□ -1.86
CTCFP49711 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC3.41□□□□□ -1.86
CTCFP49711 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC3.41□□□□□ -1.86
CTCFP49711 PIGFP2-201ENST00000421400 651 ntBASIC3.41□□□□□ -1.86
CTCFP49711 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC3.41□□□□□ -1.86
CTCFP49711 AC010975.2-201ENST00000427781 588 ntBASIC3.41□□□□□ -1.86
CTCFP49711 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.41□□□□□ -1.86
CTCFP49711 MTCYBP1-201ENST00000454315 1119 ntBASIC3.41□□□□□ -1.86
CTCFP49711 AC092798.1-201ENST00000458542 409 ntBASIC3.41□□□□□ -1.86
CTCFP49711 RPL21P99-201ENST00000480369 423 ntBASIC3.41□□□□□ -1.86
CTCFP49711 AC092436.1-201ENST00000506450 503 ntBASIC3.41□□□□□ -1.86
CTCFP49711 MTND2P33-201ENST00000506452 1031 ntBASIC3.41□□□□□ -1.86
CTCFP49711 SCARNA24.1-201ENST00000516465 137 ntBASIC3.41□□□□□ -1.86
CTCFP49711 RNA5SP148-201ENST00000516527 94 ntBASIC3.41□□□□□ -1.86
CTCFP49711 RNU7-51P-201ENST00000516560 62 ntBASIC3.41□□□□□ -1.86
CTCFP49711 SCARNA20.6-201ENST00000517251 106 ntBASIC3.41□□□□□ -1.86
CTCFP49711 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC3.41□□□□□ -1.86
CTCFP49711 HMGB1P41-201ENST00000520234 440 ntBASIC3.41□□□□□ -1.86
CTCFP49711 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.41□□□□□ -1.86
CTCFP49711 AP003122.3-201ENST00000526316 255 ntBASIC3.41□□□□□ -1.86
CTCFP49711 AP003072.2-201ENST00000527756 676 ntBASIC3.41□□□□□ -1.86
CTCFP49711 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.41□□□□□ -1.86
CTCFP49711 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3.41□□□□□ -1.86
CTCFP49711 AL670379.6-201ENST00000603753 252 ntBASIC3.41□□□□□ -1.86
CTCFP49711 AC091805.2-201ENST00000603848 235 ntBASIC3.41□□□□□ -1.86
CTCFP49711 AL670379.11-201ENST00000604059 253 ntBASIC3.41□□□□□ -1.86
CTCFP49711 HSPE1P7-201ENST00000604681 321 ntBASIC3.41□□□□□ -1.86
CTCFP49711 AC008162.1-201ENST00000604718 254 ntBASIC3.41□□□□□ -1.86
CTCFP49711 AL670379.1-201ENST00000604752 252 ntBASIC3.41□□□□□ -1.86
CTCFP49711 AL670379.5-201ENST00000605253 252 ntBASIC3.41□□□□□ -1.86
CTCFP49711 AL670379.12-201ENST00000605291 253 ntBASIC3.41□□□□□ -1.86
CTCFP49711 AL670379.8-201ENST00000605353 252 ntBASIC3.41□□□□□ -1.86
CTCFP49711 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.41□□□□□ -1.86
CTCFP49711 AL670379.7-201ENST00000605823 252 ntBASIC3.41□□□□□ -1.86
CTCFP49711 MIR98-201ENST00000606724 119 ntBASIC3.41□□□□□ -1.86
CTCFP49711 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.41□□□□□ -1.86
CTCFP49711 FRG1KP-201ENST00000623592 341 ntBASIC3.41□□□□□ -1.86
CTCFP49711 AC139792.2-201ENST00000624218 587 ntBASIC3.41□□□□□ -1.86
CTCFP49711 AC073476.4-201ENST00000628409 72 ntBASIC3.41□□□□□ -1.86
CTCFP49711 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.41□□□□□ -1.86
CTCFP49711 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.41□□□□□ -1.86
CTCFP49711 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
CTCFP49711 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.41□□□□□ -1.86
CTCFP49711 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.41□□□□□ -1.86
CTCFP49711 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
CTCFP49711 FAM35CP-201ENST00000554755 2470 ntBASIC3.41□□□□□ -1.86
CTCFP49711 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
CTCFP49711 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.4□□□□□ -1.86
CTCFP49711 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
CTCFP49711 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
CTCFP49711 RNU6-960P-201ENST00000364056 120 ntBASIC3.4□□□□□ -1.87
CTCFP49711 RNU6-188P-201ENST00000364207 107 ntBASIC3.4□□□□□ -1.87
CTCFP49711 RNU6-282P-201ENST00000365357 103 ntBASIC3.4□□□□□ -1.87
CTCFP49711 MIR558-201ENST00000384920 94 ntBASIC3.4□□□□□ -1.87
CTCFP49711 MIR325-201ENST00000385260 98 ntBASIC3.4□□□□□ -1.87
CTCFP49711 Y_RNA.582-201ENST00000391023 95 ntBASIC3.4□□□□□ -1.87
CTCFP49711 RNA5SP425-201ENST00000410336 112 ntBASIC3.4□□□□□ -1.87
CTCFP49711 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.4□□□□□ -1.87
CTCFP49711 AL358934.1-201ENST00000432346 324 ntBASIC3.4□□□□□ -1.87
CTCFP49711 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC3.4□□□□□ -1.87
CTCFP49711 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.4□□□□□ -1.87
CTCFP49711 BNIP3P2-201ENST00000441221 577 ntBASIC3.4□□□□□ -1.87
CTCFP49711 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.4□□□□□ -1.87
CTCFP49711 AC146507.2-201ENST00000460608 476 ntBASIC3.4□□□□□ -1.87
CTCFP49711 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC3.4□□□□□ -1.87
CTCFP49711 AC105252.1-201ENST00000503089 286 ntBASIC3.4□□□□□ -1.87
CTCFP49711 Y_RNA.655-201ENST00000515919 96 ntBASIC3.4□□□□□ -1.87
CTCFP49711 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.4□□□□□ -1.87
CTCFP49711 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.87
CTCFP49711 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC3.4□□□□□ -1.87
CTCFP49711 TRAV28-201ENST00000557548 323 ntBASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms