Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 U6.98-201ENST00000637157 84 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HOXD3P31249 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HOXD3P31249 ZNF519P1-201ENST00000449011 1626 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 SDAD1P2-201ENST00000441308 2028 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.03□□□□□ -1.92
HOXD3P31249 ZNF736P3Y-201ENST00000428264 1465 ntBASIC3.03□□□□□ -1.93
HOXD3P31249 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXD3P31249 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
HOXD3P31249 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.02□□□□□ -1.93
HOXD3P31249 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXD3P31249 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXD3P31249 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
HOXD3P31249 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
HOXD3P31249 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXD3P31249 RNU6-50P-201ENST00000362356 103 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 RNA5SP295-201ENST00000362655 121 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 SNORD3E-201ENST00000362899 217 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 Y_RNA.135-201ENST00000363439 95 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 RNU6-525P-201ENST00000363685 104 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 SNORD74.4-201ENST00000364129 80 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 RNU6-266P-201ENST00000364225 107 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 RNU6-474P-201ENST00000384243 107 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 RNU6-1297P-201ENST00000384415 104 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
HOXD3P31249 RNU6-370P-201ENST00000411008 104 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 CYCSP33-201ENST00000414485 327 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXD3P31249 AL159169.1-201ENST00000421119 127 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 NDUFB4P7-201ENST00000423198 363 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXD3P31249 AC091286.1-201ENST00000431233 461 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXD3P31249 HMGB1P37-201ENST00000439613 609 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXD3P31249 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXD3P31249 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXD3P31249 MTND1P17-201ENST00000448961 204 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXD3P31249 PRSS3P4-201ENST00000453323 162 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 CECR9-201ENST00000453421 199 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 RPL37P6-201ENST00000460682 294 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 RPL7P47-201ENST00000497299 556 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXD3P31249 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXD3P31249 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXD3P31249 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXD3P31249 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXD3P31249 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.02□□□□□ -1.93
HOXD3P31249 AC007151.1-201ENST00000572774 483 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 MIR5692A1-201ENST00000580523 69 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 MIR548AC-201ENST00000585049 88 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 AC022432.1-201ENST00000595739 310 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 SRGNP1-201ENST00000603392 451 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 NUTF2P8-201ENST00000604593 363 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 AL161756.2-201ENST00000604597 246 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 AC124303.1-201ENST00000605703 360 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 SNORA51-201ENST00000606420 132 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
HOXD3P31249 AL031601.2-202ENST00000622650 282 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.02□□□□□ -1.93
HOXD3P31249 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
HOXD3P31249 AC010733.2-201ENST00000589496 5702 ntBASIC3.02□□□□□ -1.93
HOXD3P31249 AC007256.1-201ENST00000392253 2765 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
HOXD3P31249 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
HOXD3P31249 ZNF962P-201ENST00000443465 3140 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 RNU6-562P-201ENST00000362731 107 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 Y_RNA.216-201ENST00000364205 93 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 Y_RNA.315-201ENST00000365117 102 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 Y_RNA.326-201ENST00000365176 113 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXD3P31249 RNU6-1179P-201ENST00000384667 107 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 RNY4P36-201ENST00000391116 96 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 RNU2-3P-201ENST00000410144 191 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXD3P31249 AL353729.1-201ENST00000425044 720 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 AF228730.2-201ENST00000438784 848 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 AL353748.1-201ENST00000440753 474 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 PIGFP3-201ENST00000441918 722 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 AC008264.1-201ENST00000447612 367 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC3.01□□□□□ -1.93
HOXD3P31249 KC877373.1-201ENST00000479066 408 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 AC139453.3-201ENST00000493276 369 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
HOXD3P31249 RPL39P5-202ENST00000512505 151 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 RNU1-86P-201ENST00000516108 154 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 RNU1-107P-201ENST00000516617 154 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 RNU6-143P-201ENST00000516942 93 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 RNU6-1315P-201ENST00000517187 99 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 CYCSP30-201ENST00000546447 172 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 YPEL5P3-201ENST00000547227 352 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 AC020661.2-201ENST00000560114 134 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.01□□□□□ -1.93
HOXD3P31249 AC244505.7-201ENST00000599675 272 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 AC012603.1-201ENST00000606424 528 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXD3P31249 RNU6ATAC35P-201ENST00000609276 444 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 AL133215.3-201ENST00000609801 448 ntBASIC3.01□□□□□ -1.93
HOXD3P31249 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.01□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms